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  5. LOC_Os04g29469

LOC_Os04g29469


Description : retrotransposon protein, putative, unclassified, expressed


Gene families : OG_42_0000180 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000180_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Oryza release: LOC_Os04g29469
Cluster HCCA clusters: cluster_0100

Target Alias Description ECC score Gene Family Method Actions
Bradi3g45424 No alias Function unknown 0.01 Orthogroups_2024-Update
Bradi4g05095 No alias Function unknown 0.01 Orthogroups_2024-Update
Bradi4g20562 No alias Function unknown 0.02 Orthogroups_2024-Update
LOC_Os10g37370 No alias retrotransposon protein, putative, unclassified, expressed 0.03 Orthogroups_2024-Update
Sobic.001G521800.1 No alias Unknown function 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
CC GO:0000148 1,3-beta-D-glucan synthase complex IEP Predicted GO
MF GO:0003843 1,3-beta-D-glucan synthase activity IEP Predicted GO
MF GO:0003872 6-phosphofructokinase activity IEP Predicted GO
MF GO:0004869 cysteine-type endopeptidase inhibitor activity IEP Predicted GO
BP GO:0005975 carbohydrate metabolic process IEP Predicted GO
BP GO:0006074 (1->3)-beta-D-glucan metabolic process IEP Predicted GO
BP GO:0006075 (1->3)-beta-D-glucan biosynthetic process IEP Predicted GO
BP GO:0006486 protein glycosylation IEP Predicted GO
BP GO:0006904 vesicle docking involved in exocytosis IEP Predicted GO
MF GO:0008443 phosphofructokinase activity IEP Predicted GO
CC GO:0016020 membrane IEP Predicted GO
BP GO:0016051 carbohydrate biosynthetic process IEP Predicted GO
CC GO:0016459 myosin complex IEP Predicted GO
MF GO:0019200 carbohydrate kinase activity IEP Predicted GO
BP GO:0019321 pentose metabolic process IEP Predicted GO
BP GO:0019566 arabinose metabolic process IEP Predicted GO
CC GO:0019867 outer membrane IEP Predicted GO
BP GO:0022406 membrane docking IEP Predicted GO
BP GO:0034637 cellular carbohydrate biosynthetic process IEP Predicted GO
BP GO:0043413 macromolecule glycosylation IEP Predicted GO
BP GO:0044262 cellular carbohydrate metabolic process IEP Predicted GO
CC GO:0044459 plasma membrane part IEP Predicted GO
BP GO:0046373 L-arabinose metabolic process IEP Predicted GO
MF GO:0046556 alpha-L-arabinofuranosidase activity IEP Predicted GO
BP GO:0048278 vesicle docking IEP Predicted GO
BP GO:0051640 organelle localization IEP Predicted GO
BP GO:0070085 glycosylation IEP Predicted GO
CC GO:0098797 plasma membrane protein complex IEP Predicted GO
BP GO:0140029 exocytic process IEP Predicted GO
BP GO:0140056 organelle localization by membrane tethering IEP Predicted GO
InterPro domains Description Start Stop
IPR005162 Retrotrans_gag_dom 2107 2196
IPR025836 Zn_knuckle_CX2CX4HX4C 318 355
IPR026960 RVT-Znf 1470 1565
IPR025558 DUF4283 161 303
IPR000477 RT_dom 1044 1157
No external refs found!