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  5. Solyc07g063200

Solyc07g063200


Description : RING/U-box superfamily protein (AHRD V3.3 *-* AT2G42030.1)


Gene families : OG_42_0000548 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000548_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Solanum release: Solyc07g063200
Cluster HCCA clusters: Cluster_201

Target Alias Description ECC score Gene Family Method Actions
A4A49_38153 No alias e3 ubiquitin-protein ligase rma1h1 0.02 Orthogroups_2024-Update
At4g28270 No alias E3 ubiquitin-protein ligase RMA2... 0.03 Orthogroups_2024-Update
Brara.A01799.1 No alias E3 ubiquitin ligase *(RMA/MUSE) 0.02 Orthogroups_2024-Update
Glyma.04G034500 No alias RING/U-box superfamily protein 0.03 Orthogroups_2024-Update
Glyma.06G034500 No alias RING/U-box superfamily protein 0.03 Orthogroups_2024-Update
Glyma.07G196000 No alias RING membrane-anchor 1 0.02 Orthogroups_2024-Update
Glyma.11G063500 No alias RING/U-box superfamily protein 0.04 Orthogroups_2024-Update
HORVU5Hr1G011730.2 No alias E3 ubiquitin ligase *(RMA/MUSE) 0.02 Orthogroups_2024-Update
LOC_Os03g47500 No alias zinc finger, C3HC4 type domain containing protein, expressed 0.02 Orthogroups_2024-Update
MA_127251g0010 No alias (at1g19310 : 231.0) RING/U-box superfamily protein;... 0.02 Orthogroups_2024-Update
Sopen01g051530 No alias Zinc finger, C3HC4 type (RING finger) 0.04 Orthogroups_2024-Update
Sopen07g028020 No alias Zinc finger, C3HC4 type (RING finger) 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0046872 metal ion binding IEA InterProScan predictions
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Type GO Term Name Evidence Source
MF GO:0003743 translation initiation factor activity IEP Predicted GO
BP GO:0006413 translational initiation IEP Predicted GO
BP GO:0006855 drug transmembrane transport IEP Predicted GO
MF GO:0008135 translation factor activity, RNA binding IEP Predicted GO
MF GO:0015238 drug transmembrane transporter activity IEP Predicted GO
MF GO:0015291 secondary active transmembrane transporter activity IEP Predicted GO
MF GO:0015297 antiporter activity IEP Predicted GO
BP GO:0015893 drug transport IEP Predicted GO
InterPro domains Description Start Stop
IPR018957 Znf_C3HC4_RING-type 68 114
No external refs found!