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  5. Solyc07g063210

Solyc07g063210


Description : Expansin (AHRD V3.3 *** G4XZZ0_9GENT)


Gene families : OG_42_0000014 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000014_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Solanum release: Solyc07g063210
Cluster HCCA clusters: Cluster_172

Target Alias Description ECC score Gene Family Method Actions
419575 No alias expansin A16 0.02 Orthogroups_2024-Update
90332 No alias Barwin-like endoglucanases superfamily protein 0.02 Orthogroups_2024-Update
A4A49_26789 No alias expansin-a3 0.03 Orthogroups_2024-Update
Bradi3g59460 No alias expansin A1 0.02 Orthogroups_2024-Update
Brara.B01279.1 No alias alpha-class expansin 0.03 Orthogroups_2024-Update
Brara.C02851.1 No alias alpha-class expansin 0.03 Orthogroups_2024-Update
Glyma.17G260400 No alias expansin 11 0.03 Orthogroups_2024-Update
LOC_Os03g06060 No alias expansin precursor, putative, expressed 0.02 Orthogroups_2024-Update
Mp5g20420.1 No alias alpha-class expansin 0.02 Orthogroups_2024-Update
PSME_00006372-RA No alias (at4g01630 : 153.0) member of Alpha-Expansin Gene... 0.03 Orthogroups_2024-Update
Sobic.003G444400.1 No alias alpha-class expansin 0.03 Orthogroups_2024-Update
Solyc08g080060 No alias Expansin-like protein (AHRD V3.3 *** Q0WT83_ARATH) 0.03 Orthogroups_2024-Update
Sopen01g006710 No alias Pollen allergen 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0000041 transition metal ion transport IEP Predicted GO
MF GO:0005375 copper ion transmembrane transporter activity IEP Predicted GO
CC GO:0005811 lipid droplet IEP Predicted GO
BP GO:0006508 proteolysis IEP Predicted GO
BP GO:0006808 regulation of nitrogen utilization IEP Predicted GO
BP GO:0006825 copper ion transport IEP Predicted GO
MF GO:0008233 peptidase activity IEP Predicted GO
CC GO:0012511 monolayer-surrounded lipid storage body IEP Predicted GO
BP GO:0035434 copper ion transmembrane transport IEP Predicted GO
MF GO:0046915 transition metal ion transmembrane transporter activity IEP Predicted GO
InterPro domains Description Start Stop
IPR009009 RlpA-like_DPBB 68 152
IPR007117 Expansin_CBD 163 241
No external refs found!