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  5. LOC_Os04g34230

LOC_Os04g34230


Description : RING-H2 finger protein, putative, expressed


Gene families : OG_42_0000003 (Orthogroups_2024-Update) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Oryza release: LOC_Os04g34230
Cluster HCCA clusters: cluster_0086

Target Alias Description ECC score Gene Family Method Actions
137213 No alias RING/U-box superfamily protein 0.04 Orthogroups_2024-Update
A4A49_27114 No alias ring-h2 finger protein atl54 0.02 Orthogroups_2024-Update
A4A49_35950 No alias e3 ubiquitin-protein ligase atl41 0.02 Orthogroups_2024-Update
At1g35330 No alias RING/U-box superfamily protein [Source:TAIR;Acc:AT1G35330] 0.02 Orthogroups_2024-Update
At1g72200 No alias RING-H2 finger protein ATL11... 0.03 Orthogroups_2024-Update
At3g14320 No alias Putative RING-H2 finger protein ATL61... 0.03 Orthogroups_2024-Update
At4g09100 No alias RING-H2 finger protein ATL39... 0.04 Orthogroups_2024-Update
Bradi3g32700 No alias RING/U-box superfamily protein 0.02 Orthogroups_2024-Update
Bradi4g13960 No alias RING/U-box superfamily protein 0.03 Orthogroups_2024-Update
Bradi5g09830 No alias RING/U-box superfamily protein 0.03 Orthogroups_2024-Update
Brara.B02534.1 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase 0.03 Orthogroups_2024-Update
Brara.D02177.1 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase 0.05 Orthogroups_2024-Update
Brara.E00161.1 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase 0.03 Orthogroups_2024-Update
Brara.E00442.1 No alias Unknown function 0.04 Orthogroups_2024-Update
Brara.E03386.1 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase 0.04 Orthogroups_2024-Update
Brara.H02311.1 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase 0.03 Orthogroups_2024-Update
Brara.J02316.1 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase 0.03 Orthogroups_2024-Update
GRMZM2G004519 No alias RING/U-box superfamily protein 0.03 Orthogroups_2024-Update
GRMZM2G028234 No alias RING/U-box superfamily protein 0.03 Orthogroups_2024-Update
GRMZM2G031280 No alias RING/U-box superfamily protein 0.03 Orthogroups_2024-Update
GRMZM2G041549 No alias RING/U-box superfamily protein 0.02 Orthogroups_2024-Update
GRMZM2G480106 No alias RING/U-box superfamily protein 0.02 Orthogroups_2024-Update
Glyma.01G017300 No alias RING/U-box superfamily protein 0.03 Orthogroups_2024-Update
Glyma.03G203400 No alias RING/U-box superfamily protein 0.03 Orthogroups_2024-Update
Glyma.06G150400 No alias RING/U-box superfamily protein 0.04 Orthogroups_2024-Update
Glyma.11G242500 No alias RING/U-box superfamily protein 0.03 Orthogroups_2024-Update
Glyma.14G058000 No alias RING/U-box superfamily protein 0.03 Orthogroups_2024-Update
HORVU0Hr1G016510.1 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase 0.03 Orthogroups_2024-Update
HORVU1Hr1G069670.1 No alias Unknown function 0.03 Orthogroups_2024-Update
HORVU2Hr1G077490.1 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase 0.06 Orthogroups_2024-Update
HORVU6Hr1G065420.2 No alias Unknown function 0.03 Orthogroups_2024-Update
HORVU7Hr1G042940.1 No alias Unknown function 0.05 Orthogroups_2024-Update
HORVU7Hr1G121010.1 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase 0.03 Orthogroups_2024-Update
LOC_Os01g55110 No alias RING-H2 finger protein, putative, expressed 0.03 Orthogroups_2024-Update
LOC_Os02g58540 No alias RING-H2 finger protein, putative, expressed 0.03 Orthogroups_2024-Update
LOC_Os04g50100 No alias RING-H2 finger protein ATL5G, putative, expressed 0.03 Orthogroups_2024-Update
LOC_Os05g11860 No alias zinc finger, C3HC4 type domain containing protein, expressed 0.02 Orthogroups_2024-Update
PSME_00011913-RA No alias (at3g51430 : 162.0) Although this enzyme is predicted to... 0.03 Orthogroups_2024-Update
PSME_00051567-RA No alias (at3g16720 : 108.0) RING-H2 protein induced after... 0.03 Orthogroups_2024-Update
Potri.002G101800 No alias RING/U-box superfamily protein 0.02 Orthogroups_2024-Update
Potri.005G113200 No alias receptor homology region transmembrane domain ring H2... 0.02 Orthogroups_2024-Update
Potri.008G018900 No alias RING/U-box superfamily protein 0.02 Orthogroups_2024-Update
Potri.008G071000 No alias RING/U-box superfamily protein 0.04 Orthogroups_2024-Update
Potri.010G243300 No alias RING/U-box superfamily protein 0.02 Orthogroups_2024-Update
Potri.016G067900 No alias RING/U-box superfamily protein 0.02 Orthogroups_2024-Update
Pp1s14_164V6 No alias zinc finger (c3hc4-type ring finger) family protein 0.02 Orthogroups_2024-Update
Pp1s71_157V6 No alias ac009177_16 ring-h2 zinc finger protein atl6 0.02 Orthogroups_2024-Update
Pp1s71_162V6 No alias ring finger 0.02 Orthogroups_2024-Update
Seita.1G270700.1 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase 0.03 Orthogroups_2024-Update
Seita.2G238400.1 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase 0.02 Orthogroups_2024-Update
Seita.2G390800.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Seita.3G023500.1 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase 0.03 Orthogroups_2024-Update
Seita.5G368500.1 No alias Unknown function 0.04 Orthogroups_2024-Update
Seita.7G205000.1 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase 0.03 Orthogroups_2024-Update
Seita.7G218600.1 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase 0.03 Orthogroups_2024-Update
Sobic.001G063900.1 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase 0.05 Orthogroups_2024-Update
Sobic.002G232800.1 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase 0.02 Orthogroups_2024-Update
Sobic.003G299800.1 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase 0.03 Orthogroups_2024-Update
Sobic.004G109900.1 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase 0.03 Orthogroups_2024-Update
Sobic.004G187800.1 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase 0.04 Orthogroups_2024-Update
Sobic.004G283400.1 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase 0.02 Orthogroups_2024-Update
Sobic.009G110400.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Solyc10g011880 No alias RING/U-box superfamily protein (AHRD V3.3 *** AT3G61550.1) 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0004525 ribonuclease III activity IEP Predicted GO
MF GO:0004659 prenyltransferase activity IEP Predicted GO
BP GO:0006355 regulation of transcription, DNA-templated IEP Predicted GO
BP GO:0006457 protein folding IEP Predicted GO
MF GO:0008318 protein prenyltransferase activity IEP Predicted GO
BP GO:0009889 regulation of biosynthetic process IEP Predicted GO
BP GO:0010468 regulation of gene expression IEP Predicted GO
BP GO:0010556 regulation of macromolecule biosynthetic process IEP Predicted GO
MF GO:0016765 transferase activity, transferring alkyl or aryl (other than methyl) groups IEP Predicted GO
BP GO:0018342 protein prenylation IEP Predicted GO
BP GO:0019219 regulation of nucleobase-containing compound metabolic process IEP Predicted GO
BP GO:0031323 regulation of cellular metabolic process IEP Predicted GO
BP GO:0031326 regulation of cellular biosynthetic process IEP Predicted GO
MF GO:0032296 double-stranded RNA-specific ribonuclease activity IEP Predicted GO
MF GO:0043565 sequence-specific DNA binding IEP Predicted GO
BP GO:0050789 regulation of biological process IEP Predicted GO
BP GO:0050794 regulation of cellular process IEP Predicted GO
MF GO:0051082 unfolded protein binding IEP Predicted GO
BP GO:0051171 regulation of nitrogen compound metabolic process IEP Predicted GO
BP GO:0051252 regulation of RNA metabolic process IEP Predicted GO
BP GO:0065007 biological regulation IEP Predicted GO
BP GO:0080090 regulation of primary metabolic process IEP Predicted GO
BP GO:0097354 prenylation IEP Predicted GO
BP GO:1903506 regulation of nucleic acid-templated transcription IEP Predicted GO
BP GO:2000112 regulation of cellular macromolecule biosynthetic process IEP Predicted GO
BP GO:2001141 regulation of RNA biosynthetic process IEP Predicted GO
InterPro domains Description Start Stop
IPR001841 Znf_RING 236 279
No external refs found!