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  5. Solyc07g063890

Solyc07g063890


No description available


Gene families : OG_42_0001760 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001760_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Solanum release: Solyc07g063890
Cluster HCCA clusters: Cluster_34

Target Alias Description ECC score Gene Family Method Actions
170971 No alias Ribosomal protein L2 family 0.1 Orthogroups_2024-Update
A4A49_56239 No alias 60s ribosomal protein l8 0.06 Orthogroups_2024-Update
Bradi4g04120 No alias Ribosomal protein L2 family 0.1 Orthogroups_2024-Update
Brara.A00238.1 No alias component *(uL2) of large ribosomal-subunit (LSU) proteome 0.09 Orthogroups_2024-Update
Brara.G00216.1 No alias component *(uL2) of large ribosomal-subunit (LSU) proteome 0.1 Orthogroups_2024-Update
Brara.K01326.1 No alias component *(uL2) of large ribosomal-subunit (LSU) proteome 0.08 Orthogroups_2024-Update
Cre12.g535851 No alias Ribosomal protein L2 family 0.03 Orthogroups_2024-Update
Glyma.01G167300 No alias Ribosomal protein L2 family 0.05 Orthogroups_2024-Update
Glyma.02G049300 No alias Ribosomal protein L2 family 0.08 Orthogroups_2024-Update
Glyma.16G129700 No alias Ribosomal protein L2 family 0.03 Orthogroups_2024-Update
HORVU5Hr1G021730.2 No alias component *(uL2) of large ribosomal-subunit (LSU) proteome 0.07 Orthogroups_2024-Update
Kfl00779_0020 kfl00779_0020_v1.1 (at4g36130 : 456.0) Ribosomal protein L2 family;... 0.02 Orthogroups_2024-Update
Mp7g01860.1 No alias component RPL8 of LSU proteome component 0.06 Orthogroups_2024-Update
Mp7g08730.1 No alias component RPL8 of LSU proteome component 0.03 Orthogroups_2024-Update
PSME_00025506-RA No alias (at4g36130 : 481.0) Ribosomal protein L2 family;... 0.04 Orthogroups_2024-Update
Pp1s37_247V6 No alias 60s ribosomal protein l2 0.08 Orthogroups_2024-Update
Seita.2G112000.1 No alias component *(uL2) of large ribosomal-subunit (LSU) proteome 0.1 Orthogroups_2024-Update
Seita.3G330100.1 No alias component *(uL2) of large ribosomal-subunit (LSU) proteome 0.07 Orthogroups_2024-Update
Sobic.002G115000.1 No alias component *(uL2) of large ribosomal-subunit (LSU) proteome 0.06 Orthogroups_2024-Update
Sobic.008G135000.1 No alias component *(uL2) of large ribosomal-subunit (LSU) proteome 0.1 Orthogroups_2024-Update
Sopen07g032020 No alias Ribosomal Proteins L2, C-terminal domain 0.1 Orthogroups_2024-Update
Sopen10g002530 No alias Ribosomal Proteins L2, C-terminal domain 0.09 Orthogroups_2024-Update
Sopen12g001310 No alias Ribosomal Proteins L2, C-terminal domain 0.06 Orthogroups_2024-Update
evm.model.contig_2057.10 No alias (at4g36130 : 380.0) Ribosomal protein L2 family;... 0.14 Orthogroups_2024-Update
evm.model.tig00020965.22 No alias (at2g18020 : 400.0) embryo defective 2296 (EMB2296);... 0.04 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEP Predicted GO
MF GO:0003735 structural constituent of ribosome IEP Predicted GO
MF GO:0005198 structural molecule activity IEP Predicted GO
CC GO:0005575 cellular_component IEP Predicted GO
CC GO:0005622 intracellular IEP Predicted GO
CC GO:0005840 ribosome IEP Predicted GO
BP GO:0006412 translation IEP Predicted GO
BP GO:0006518 peptide metabolic process IEP Predicted GO
BP GO:0009058 biosynthetic process IEP Predicted GO
BP GO:0009059 macromolecule biosynthetic process IEP Predicted GO
MF GO:0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor IEP Predicted GO
BP GO:0019538 protein metabolic process IEP Predicted GO
MF GO:0019843 rRNA binding IEP Predicted GO
BP GO:0022613 ribonucleoprotein complex biogenesis IEP Predicted GO
CC GO:0032991 protein-containing complex IEP Predicted GO
BP GO:0034641 cellular nitrogen compound metabolic process IEP Predicted GO
BP GO:0034645 cellular macromolecule biosynthetic process IEP Predicted GO
BP GO:0042254 ribosome biogenesis IEP Predicted GO
BP GO:0043043 peptide biosynthetic process IEP Predicted GO
CC GO:0043226 organelle IEP Predicted GO
CC GO:0043228 non-membrane-bounded organelle IEP Predicted GO
CC GO:0043229 intracellular organelle IEP Predicted GO
CC GO:0043232 intracellular non-membrane-bounded organelle IEP Predicted GO
BP GO:0043603 cellular amide metabolic process IEP Predicted GO
BP GO:0043604 amide biosynthetic process IEP Predicted GO
BP GO:0044085 cellular component biogenesis IEP Predicted GO
BP GO:0044249 cellular biosynthetic process IEP Predicted GO
BP GO:0044260 cellular macromolecule metabolic process IEP Predicted GO
BP GO:0044267 cellular protein metabolic process IEP Predicted GO
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP Predicted GO
CC GO:0044424 intracellular part IEP Predicted GO
CC GO:0044444 cytoplasmic part IEP Predicted GO
CC GO:0044464 cell part IEP Predicted GO
MF GO:0051082 unfolded protein binding IEP Predicted GO
BP GO:1901566 organonitrogen compound biosynthetic process IEP Predicted GO
BP GO:1901576 organic substance biosynthetic process IEP Predicted GO
CC GO:1990904 ribonucleoprotein complex IEP Predicted GO

No InterPro domains available for this sequence

No external refs found!