LOC_Os04g38720

Description : no apical meristem protein, putative, expressed

Gene families : OG_42_0000017 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000017_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Oryza release: LOC_Os04g38720
Cluster	HCCA clusters: cluster_0084

Target	Alias	Description	ECC score	Gene Family Method
A4A49_58267	No alias	hypothetical protein	0.02	Orthogroups_2024-Update
At3g49530	No alias	NAC domain-containing protein 62...	0.03	Orthogroups_2024-Update
Brara.A00921.1	No alias	NAC-type transcription factor	0.02	Orthogroups_2024-Update
Brara.E01767.1	No alias	NAC-type transcription factor	0.02	Orthogroups_2024-Update
Brara.F02288.1	No alias	NAC-type transcription factor	0.03	Orthogroups_2024-Update
Brara.G01456.1	No alias	NAC-type transcription factor	0.02	Orthogroups_2024-Update
GRMZM2G018436	No alias	Arabidopsis NAC domain containing protein 87	0.03	Orthogroups_2024-Update
Glyma.02G050100	No alias	vascular related NAC-domain protein 1	0.03	Orthogroups_2024-Update
Glyma.10G197600	No alias	NAC domain containing protein 2	0.03	Orthogroups_2024-Update
Glyma.16G042900	No alias	Arabidopsis NAC domain containing protein 87	0.03	Orthogroups_2024-Update
HORVU4Hr1G085320.4	No alias	NAC-type transcription factor	0.03	Orthogroups_2024-Update
HORVU5Hr1G087850.1	No alias	NAC-type transcription factor	0.02	Orthogroups_2024-Update
MA_6571438g0010	No alias	no hits & (original description: no original description)	0.03	Orthogroups_2024-Update
Mp4g11910.1	No alias	transcription factor (NAC)	0.03	Orthogroups_2024-Update
PSME_00001380-RA	No alias	(at5g53950 : 248.0) Transcriptional activator of the NAC...	0.03	Orthogroups_2024-Update
PSME_00050753-RA	No alias	(at1g79580 : 251.0) NAC-domain protein. Involved in root...	0.02	Orthogroups_2024-Update
Potri.010G229700	No alias	NAC domain containing protein 50	0.02	Orthogroups_2024-Update
Sopen05g033920	No alias	No apical meristem (NAM) protein	0.03	Orthogroups_2024-Update
Sopen06g029400	No alias	No apical meristem (NAM) protein	0.02	Orthogroups_2024-Update
Sopen06g030590	No alias	No apical meristem (NAM) protein	0.02	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	IEA	InterProScan predictions
MF	GO:0005488	binding	None	Extended
BP	GO:0006355	regulation of transcription, DNA-templated	IEA	InterProScan predictions
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2000112	regulation of cellular macromolecule biosynthetic process	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0000413	protein peptidyl-prolyl isomerization	IEP	Predicted GO
MF	GO:0003723	RNA binding	IEP	Predicted GO
MF	GO:0003755	peptidyl-prolyl cis-trans isomerase activity	IEP	Predicted GO
MF	GO:0004143	diacylglycerol kinase activity	IEP	Predicted GO
BP	GO:0006284	base-excision repair	IEP	Predicted GO
BP	GO:0006364	rRNA processing	IEP	Predicted GO
BP	GO:0007165	signal transduction	IEP	Predicted GO
BP	GO:0007186	G protein-coupled receptor signaling pathway	IEP	Predicted GO
BP	GO:0007205	protein kinase C-activating G protein-coupled receptor signaling pathway	IEP	Predicted GO
BP	GO:0009058	biosynthetic process	IEP	Predicted GO
BP	GO:0009059	macromolecule biosynthetic process	IEP	Predicted GO
BP	GO:0016072	rRNA metabolic process	IEP	Predicted GO
MF	GO:0016840	carbon-nitrogen lyase activity	IEP	Predicted GO
MF	GO:0016843	amine-lyase activity	IEP	Predicted GO
MF	GO:0016844	strictosidine synthase activity	IEP	Predicted GO
MF	GO:0016859	cis-trans isomerase activity	IEP	Predicted GO
BP	GO:0018208	peptidyl-proline modification	IEP	Predicted GO
BP	GO:0034645	cellular macromolecule biosynthetic process	IEP	Predicted GO
BP	GO:0035556	intracellular signal transduction	IEP	Predicted GO
BP	GO:0044271	cellular nitrogen compound biosynthetic process	IEP	Predicted GO

InterPro domains	Description	Start	Stop
IPR003441	NAC-dom	13	137

External Links

No external refs found!

LOC_Os04g38720

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation