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  5. LOC_Os04g38780

LOC_Os04g38780


Description : transcription factor, putative, expressed


Gene families : OG_42_0000009 (Orthogroups_2024-Update) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Oryza release: LOC_Os04g38780
Cluster HCCA clusters: cluster_0130

Target Alias Description ECC score Gene Family Method Actions
A4A49_09228 No alias mads-box protein jointless 0.02 Orthogroups_2024-Update
A4A49_11845 No alias agamous-like mads-box protein agl62 0.02 Orthogroups_2024-Update
A4A49_27621 No alias agamous-like mads-box protein agl9 0.03 Orthogroups_2024-Update
A4A49_39464 No alias agamous-like mads-box protein agl8 0.02 Orthogroups_2024-Update
At1g22130 No alias Agamous-like MADS-box protein AGL104... 0.03 Orthogroups_2024-Update
At5g23260 No alias K-box region and MADS-box transcription factor family... 0.02 Orthogroups_2024-Update
Bradi3g32090 No alias AGAMOUS-like 20 0.02 Orthogroups_2024-Update
Bradi3g57017 No alias AGAMOUS-like 16 0.03 Orthogroups_2024-Update
Bradi5g12437 No alias AGAMOUS-like 16 0.02 Orthogroups_2024-Update
Brara.D00221.1 No alias MADS/AGL-type transcription factor 0.02 Orthogroups_2024-Update
Brara.D00288.1 No alias MADS/AGL-type transcription factor 0.03 Orthogroups_2024-Update
Brara.D02757.1 No alias MADS/AGL-type transcription factor 0.04 Orthogroups_2024-Update
Brara.G02489.1 No alias regulatory protein *(AP1/CAL/FUL) of floral meristem... 0.02 Orthogroups_2024-Update
Brara.K00360.1 No alias MADS/AGL-type transcription factor 0.05 Orthogroups_2024-Update
Glyma.08G282500 No alias AGAMOUS-like 29 0.03 Orthogroups_2024-Update
Glyma.13G255200 No alias AGAMOUS-like 21 0.02 Orthogroups_2024-Update
Glyma.15G196300 No alias MADS-box transcription factor family protein 0.02 Orthogroups_2024-Update
Glyma.16G091300 No alias K-box region and MADS-box transcription factor family protein 0.03 Orthogroups_2024-Update
Glyma.20G136600 No alias AGAMOUS-like 62 0.02 Orthogroups_2024-Update
Potri.001G328600 No alias AGAMOUS-like 8 0.03 Orthogroups_2024-Update
Potri.002G062000 No alias AGAMOUS-like 61 0.02 Orthogroups_2024-Update
Potri.004G064300 No alias K-box region and MADS-box transcription factor family protein 0.02 Orthogroups_2024-Update
Potri.015G098400 No alias AGAMOUS-like 19 0.03 Orthogroups_2024-Update
Seita.5G036500.1 No alias MADS/AGL-type transcription factor 0.03 Orthogroups_2024-Update
Seita.9G490400.1 No alias Unknown function 0.04 Orthogroups_2024-Update
Sobic.007G192900.1 No alias MADS/AGL-type transcription factor 0.02 Orthogroups_2024-Update
Solyc01g106710 No alias Transcription factor, MADS-box (AHRD V3.3 *** A0A103YIH6_CYNCS) 0.03 Orthogroups_2024-Update
Solyc08g067230 No alias MADS box transcription factor (AHRD V3.3 *** G3EIU8_9SOLA) 0.04 Orthogroups_2024-Update
Sopen01g026520 No alias SRF-type transcription factor (DNA-binding and... 0.02 Orthogroups_2024-Update
Sopen01g037770 No alias K-box region 0.02 Orthogroups_2024-Update
Sopen04g030410 No alias K-box region 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003700 DNA-binding transcription factor activity IEA InterProScan predictions
CC GO:0005634 nucleus IEA InterProScan predictions
BP GO:0006355 regulation of transcription, DNA-templated IEA InterProScan predictions
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP Predicted GO
MF GO:0001882 nucleoside binding IEP Predicted GO
MF GO:0001883 purine nucleoside binding IEP Predicted GO
MF GO:0003860 3-hydroxyisobutyryl-CoA hydrolase activity IEP Predicted GO
MF GO:0004674 protein serine/threonine kinase activity IEP Predicted GO
MF GO:0005525 GTP binding IEP Predicted GO
BP GO:0006835 dicarboxylic acid transport IEP Predicted GO
MF GO:0008081 phosphoric diester hydrolase activity IEP Predicted GO
MF GO:0008519 ammonium transmembrane transporter activity IEP Predicted GO
CC GO:0009507 chloroplast IEP Predicted GO
CC GO:0009536 plastid IEP Predicted GO
BP GO:0009767 photosynthetic electron transport chain IEP Predicted GO
BP GO:0015696 ammonium transport IEP Predicted GO
BP GO:0015711 organic anion transport IEP Predicted GO
BP GO:0015740 C4-dicarboxylate transport IEP Predicted GO
BP GO:0015743 malate transport IEP Predicted GO
BP GO:0015849 organic acid transport IEP Predicted GO
MF GO:0016168 chlorophyll binding IEP Predicted GO
MF GO:0016289 CoA hydrolase activity IEP Predicted GO
MF GO:0016307 phosphatidylinositol phosphate kinase activity IEP Predicted GO
CC GO:0016459 myosin complex IEP Predicted GO
MF GO:0016790 thiolester hydrolase activity IEP Predicted GO
MF GO:0017076 purine nucleotide binding IEP Predicted GO
MF GO:0019001 guanyl nucleotide binding IEP Predicted GO
BP GO:0019684 photosynthesis, light reaction IEP Predicted GO
BP GO:0022900 electron transport chain IEP Predicted GO
MF GO:0032549 ribonucleoside binding IEP Predicted GO
MF GO:0032550 purine ribonucleoside binding IEP Predicted GO
MF GO:0032553 ribonucleotide binding IEP Predicted GO
MF GO:0032555 purine ribonucleotide binding IEP Predicted GO
MF GO:0032561 guanyl ribonucleotide binding IEP Predicted GO
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Predicted GO
MF GO:0036094 small molecule binding IEP Predicted GO
MF GO:0043168 anion binding IEP Predicted GO
MF GO:0046422 violaxanthin de-epoxidase activity IEP Predicted GO
BP GO:0046942 carboxylic acid transport IEP Predicted GO
MF GO:0097367 carbohydrate derivative binding IEP Predicted GO
MF GO:1901265 nucleoside phosphate binding IEP Predicted GO
InterPro domains Description Start Stop
IPR002487 TF_Kbox 78 139
No external refs found!