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  5. LOC_Os04g39070

LOC_Os04g39070


Description : OsFBX139 - F-box domain containing protein, expressed


Gene families : OG_42_0000187 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000187_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Oryza release: LOC_Os04g39070
Cluster HCCA clusters: cluster_0062

Target Alias Description ECC score Gene Family Method Actions
Bradi3g34191 No alias F-box/RNI-like superfamily protein 0.03 Orthogroups_2024-Update
Bradi3g60240 No alias F-box/RNI-like superfamily protein 0.02 Orthogroups_2024-Update
Bradi4g22946 No alias FBD, F-box and Leucine Rich Repeat domains containing protein 0.02 Orthogroups_2024-Update
Bradi4g23238 No alias F-box/RNI-like/FBD-like domains-containing protein 0.03 Orthogroups_2024-Update
LOC_Os08g09910 No alias OsFBX276 - F-box domain containing protein, expressed 0.02 Orthogroups_2024-Update
LOC_Os11g09478 No alias OsFBX402 - F-box domain containing protein, expressed 0.04 Orthogroups_2024-Update
Seita.3G401900.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Seita.7G106400.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Seita.8G152600.1 No alias Unknown function 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA InterProScan predictions
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Type GO Term Name Evidence Source
BP GO:0000096 sulfur amino acid metabolic process IEP Predicted GO
BP GO:0000097 sulfur amino acid biosynthetic process IEP Predicted GO
CC GO:0000228 nuclear chromosome IEP Predicted GO
MF GO:0003871 5-methyltetrahydropteroyltriglutamate-homocysteine S-methyltransferase activity IEP Predicted GO
MF GO:0004190 aspartic-type endopeptidase activity IEP Predicted GO
MF GO:0004559 alpha-mannosidase activity IEP Predicted GO
MF GO:0004571 mannosyl-oligosaccharide 1,2-alpha-mannosidase activity IEP Predicted GO
CC GO:0005694 chromosome IEP Predicted GO
BP GO:0006338 chromatin remodeling IEP Predicted GO
BP GO:0006352 DNA-templated transcription, initiation IEP Predicted GO
BP GO:0006367 transcription initiation from RNA polymerase II promoter IEP Predicted GO
BP GO:0006555 methionine metabolic process IEP Predicted GO
MF GO:0008172 S-methyltransferase activity IEP Predicted GO
BP GO:0009066 aspartate family amino acid metabolic process IEP Predicted GO
BP GO:0009067 aspartate family amino acid biosynthetic process IEP Predicted GO
BP GO:0009086 methionine biosynthetic process IEP Predicted GO
MF GO:0015923 mannosidase activity IEP Predicted GO
MF GO:0015924 mannosyl-oligosaccharide mannosidase activity IEP Predicted GO
MF GO:0042085 5-methyltetrahydropteroyltri-L-glutamate-dependent methyltransferase activity IEP Predicted GO
BP GO:0044272 sulfur compound biosynthetic process IEP Predicted GO
MF GO:0070001 aspartic-type peptidase activity IEP Predicted GO
InterPro domains Description Start Stop
IPR001810 F-box_dom 26 63
No external refs found!