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LOC_Os04g42010


Description : RNA binding protein, putative, expressed


Gene families : OG_42_0002790 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0002790_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Oryza release: LOC_Os04g42010
Cluster HCCA clusters: cluster_0043

Target Alias Description ECC score Gene Family Method Actions
Glyma.06G082200 No alias La protein 1 0.02 Orthogroups_2024-Update
Glyma.17G190500 No alias La protein 1 0.02 Orthogroups_2024-Update
Seita.7G153300.1 No alias nascent RNA chaperone *(LA) 0.02 Orthogroups_2024-Update
Sobic.004G211100.1 No alias nascent RNA chaperone *(LA) 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA InterProScan predictions
MF GO:0003723 RNA binding IEA InterProScan predictions
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Type GO Term Name Evidence Source
CC GO:0000313 organellar ribosome IEP Predicted GO
MF GO:0004721 phosphoprotein phosphatase activity IEP Predicted GO
CC GO:0005730 nucleolus IEP Predicted GO
CC GO:0005761 mitochondrial ribosome IEP Predicted GO
BP GO:0006284 base-excision repair IEP Predicted GO
BP GO:0006810 transport IEP Predicted GO
MF GO:0008134 transcription factor binding IEP Predicted GO
MF GO:0008138 protein tyrosine/serine/threonine phosphatase activity IEP Predicted GO
MF GO:0008536 Ran GTPase binding IEP Predicted GO
BP GO:0016311 dephosphorylation IEP Predicted GO
MF GO:0017016 Ras GTPase binding IEP Predicted GO
MF GO:0031267 small GTPase binding IEP Predicted GO
MF GO:0051020 GTPase binding IEP Predicted GO
BP GO:0051179 localization IEP Predicted GO
BP GO:0051234 establishment of localization IEP Predicted GO
CC GO:0098798 mitochondrial protein complex IEP Predicted GO
InterPro domains Description Start Stop
IPR000504 RRM_dom 129 183
IPR014886 La_RRM 305 400
IPR006630 La_HTH 19 86
No external refs found!