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  5. LOC_Os04g42810

LOC_Os04g42810


Description : transposon protein, putative, unclassified


Gene families : OG_42_0000225 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000225_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Oryza release: LOC_Os04g42810
Cluster HCCA clusters: cluster_0102

Target Alias Description ECC score Gene Family Method Actions
Brara.F00372.1 No alias Unknown function 0.02 Orthogroups_2024-Update
Brara.I02412.1 No alias Unknown function 0.03 Orthogroups_2024-Update
HORVU4Hr1G020180.1 No alias Unknown function 0.03 Orthogroups_2024-Update
LOC_Os01g27030 No alias hypothetical protein 0.03 Orthogroups_2024-Update
LOC_Os07g43120 No alias transposon protein, putative, unclassified, expressed 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA InterProScan predictions
MF GO:0046983 protein dimerization activity IEA InterProScan predictions
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Type GO Term Name Evidence Source
MF GO:0000213 tRNA-intron endonuclease activity IEP Predicted GO
BP GO:0000394 RNA splicing, via endonucleolytic cleavage and ligation IEP Predicted GO
MF GO:0004549 tRNA-specific ribonuclease activity IEP Predicted GO
BP GO:0006388 tRNA splicing, via endonucleolytic cleavage and ligation IEP Predicted GO
BP GO:0006399 tRNA metabolic process IEP Predicted GO
BP GO:0008380 RNA splicing IEP Predicted GO
MF GO:0016892 endoribonuclease activity, producing 3'-phosphomonoesters IEP Predicted GO
MF GO:0016894 endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 3'-phosphomonoesters IEP Predicted GO
BP GO:0034660 ncRNA metabolic process IEP Predicted GO
MF GO:0140101 catalytic activity, acting on a tRNA IEP Predicted GO
InterPro domains Description Start Stop
IPR008906 HATC_C_dom 290 347
IPR025525 hAT-like_transposase_RNase-H 224 294
No external refs found!