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  5. LOC_Os04g43050

LOC_Os04g43050


Description : Dicer, putative, expressed


Gene families : OG_42_0000292 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000292_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Oryza release: LOC_Os04g43050
Cluster HCCA clusters: cluster_0129

Target Alias Description ECC score Gene Family Method Actions
429802 No alias dicer-like 3 0.02 Orthogroups_2024-Update
Bradi2g58270 No alias dicer-like 3 0.03 Orthogroups_2024-Update
Brara.E02164.1 No alias ribonuclease *(RTL2) 0.03 Orthogroups_2024-Update
HORVU1Hr1G042710.5 No alias endoribonuclease *(DCL3) 0.03 Orthogroups_2024-Update
LOC_Os05g18850 No alias endoribonuclease Dicer, putative, expressed 0.03 Orthogroups_2024-Update
LOC_Os09g14610 No alias DCL2, putative, expressed 0.02 Orthogroups_2024-Update
Mp7g12090.1 No alias endoribonuclease component DCL1 of DCL1-HYL1 miRNA... 0.02 Orthogroups_2024-Update
PSME_00020762-RA No alias (at1g01040 : 247.0) Encodes a Dicer homolog. Dicer is a... 0.02 Orthogroups_2024-Update
PSME_00044400-RA No alias (at1g01040 : 490.0) Encodes a Dicer homolog. Dicer is a... 0.02 Orthogroups_2024-Update
PSME_00053348-RA No alias (at1g01040 : 195.0) Encodes a Dicer homolog. Dicer is a... 0.02 Orthogroups_2024-Update
Pp1s30_297V6 No alias dicer-like protein 0.02 Orthogroups_2024-Update
Seita.5G422300.1 No alias endoribonuclease *(DCL3) 0.03 Orthogroups_2024-Update
Sopen05g025990 No alias Ribonuclease III domain 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0004525 ribonuclease III activity IEA InterProScan predictions
MF GO:0005515 protein binding IEA InterProScan predictions
BP GO:0006396 RNA processing IEA InterProScan predictions
MF GO:0016891 endoribonuclease activity, producing 5'-phosphomonoesters IEA InterProScan predictions
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Type GO Term Name Evidence Source
BP GO:0000272 polysaccharide catabolic process IEP Predicted GO
MF GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds IEP Predicted GO
MF GO:0004556 alpha-amylase activity IEP Predicted GO
MF GO:0004568 chitinase activity IEP Predicted GO
MF GO:0005085 guanyl-nucleotide exchange factor activity IEP Predicted GO
MF GO:0005088 Ras guanyl-nucleotide exchange factor activity IEP Predicted GO
MF GO:0005089 Rho guanyl-nucleotide exchange factor activity IEP Predicted GO
BP GO:0006022 aminoglycan metabolic process IEP Predicted GO
BP GO:0006026 aminoglycan catabolic process IEP Predicted GO
BP GO:0006030 chitin metabolic process IEP Predicted GO
BP GO:0006032 chitin catabolic process IEP Predicted GO
BP GO:0006040 amino sugar metabolic process IEP Predicted GO
BP GO:0006354 DNA-templated transcription, elongation IEP Predicted GO
BP GO:0006368 transcription elongation from RNA polymerase II promoter IEP Predicted GO
BP GO:0006399 tRNA metabolic process IEP Predicted GO
CC GO:0008023 transcription elongation factor complex IEP Predicted GO
BP GO:0008033 tRNA processing IEP Predicted GO
BP GO:0009056 catabolic process IEP Predicted GO
BP GO:0009057 macromolecule catabolic process IEP Predicted GO
MF GO:0016160 amylase activity IEP Predicted GO
MF GO:0016161 beta-amylase activity IEP Predicted GO
BP GO:0016569 covalent chromatin modification IEP Predicted GO
BP GO:0016570 histone modification IEP Predicted GO
CC GO:0016593 Cdc73/Paf1 complex IEP Predicted GO
MF GO:0016798 hydrolase activity, acting on glycosyl bonds IEP Predicted GO
BP GO:0016998 cell wall macromolecule catabolic process IEP Predicted GO
MF GO:0017016 Ras GTPase binding IEP Predicted GO
MF GO:0017048 Rho GTPase binding IEP Predicted GO
MF GO:0031267 small GTPase binding IEP Predicted GO
BP GO:0032774 RNA biosynthetic process IEP Predicted GO
BP GO:0034470 ncRNA processing IEP Predicted GO
BP GO:0034660 ncRNA metabolic process IEP Predicted GO
BP GO:0042737 drug catabolic process IEP Predicted GO
BP GO:0044036 cell wall macromolecule metabolic process IEP Predicted GO
BP GO:0046348 amino sugar catabolic process IEP Predicted GO
MF GO:0051020 GTPase binding IEP Predicted GO
BP GO:1901071 glucosamine-containing compound metabolic process IEP Predicted GO
BP GO:1901072 glucosamine-containing compound catabolic process IEP Predicted GO
BP GO:1901136 carbohydrate derivative catabolic process IEP Predicted GO
BP GO:1901575 organic substance catabolic process IEP Predicted GO
InterPro domains Description Start Stop
IPR003100 PAZ_dom 772 900
IPR005034 Dicer_dimerisation_dom 512 594
IPR000999 RNase_III_dom 943 1073
IPR000999 RNase_III_dom 1149 1258
IPR001650 Helicase_C 329 446
IPR014720 dsRBD_dom 1285 1349
No external refs found!