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Description : pentatricopeptide, putative, expressed
Gene families : OG_42_0000001 (Orthogroups_2024-Update) Phylogenetic Tree(s): No tree available for this family
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | Oryza release: LOC_Os04g43430 | |
| Cluster | HCCA clusters: cluster_0057 |
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| At1g08070 | No alias | Pentatricopeptide repeat-containing protein At1g08070,... | 0.04 | Orthogroups_2024-Update | |
| At1g11290 | No alias | CRR22 [Source:UniProtKB/TrEMBL;Acc:A0A178WFR8] | 0.03 | Orthogroups_2024-Update | |
| At1g17630 | No alias | Putative pentatricopeptide repeat-containing protein... | 0.02 | Orthogroups_2024-Update | |
| At4g20770 | No alias | Pentatricopeptide repeat-containing protein At4g20770... | 0.03 | Orthogroups_2024-Update | |
| Bradi1g21907 | No alias | Pentatricopeptide repeat (PPR) superfamily protein | 0.03 | Orthogroups_2024-Update | |
| Bradi1g36120 | No alias | Pentatricopeptide repeat (PPR-like) superfamily protein | 0.02 | Orthogroups_2024-Update | |
| Bradi1g68870 | No alias | Pentatricopeptide repeat (PPR) superfamily protein | 0.03 | Orthogroups_2024-Update | |
| Bradi1g72290 | No alias | Pentatricopeptide repeat (PPR) superfamily protein | 0.03 | Orthogroups_2024-Update | |
| Bradi2g04723 | No alias | Pentatricopeptide repeat (PPR) superfamily protein | 0.02 | Orthogroups_2024-Update | |
| Bradi2g09441 | No alias | Pentatricopeptide repeat (PPR) superfamily protein | 0.02 | Orthogroups_2024-Update | |
| Bradi2g22840 | No alias | Pentatricopeptide repeat (PPR) superfamily protein | 0.02 | Orthogroups_2024-Update | |
| Bradi2g61387 | No alias | Tetratricopeptide repeat (TPR)-like superfamily protein | 0.02 | Orthogroups_2024-Update | |
| Bradi3g04890 | No alias | Pentatricopeptide repeat (PPR) superfamily protein | 0.03 | Orthogroups_2024-Update | |
| Bradi3g37252 | No alias | Tetratricopeptide repeat (TPR)-like superfamily protein | 0.03 | Orthogroups_2024-Update | |
| Bradi4g20810 | No alias | Tetratricopeptide repeat (TPR)-like superfamily protein | 0.03 | Orthogroups_2024-Update | |
| Brara.F01443.1 | No alias | Unknown function | 0.03 | Orthogroups_2024-Update | |
| Brara.G03498.1 | No alias | Unknown function | 0.03 | Orthogroups_2024-Update | |
| Glyma.02G043900 | No alias | Tetratricopeptide repeat (TPR)-like superfamily protein | 0.02 | Orthogroups_2024-Update | |
| Glyma.07G159200 | No alias | Tetratricopeptide repeat (TPR)-like superfamily protein | 0.02 | Orthogroups_2024-Update | |
| Glyma.09G086600 | No alias | Pentatricopeptide repeat (PPR-like) superfamily protein | 0.03 | Orthogroups_2024-Update | |
| Glyma.13G220450 | No alias | Tetratricopeptide repeat (TPR)-like superfamily protein | 0.02 | Orthogroups_2024-Update | |
| HORVU3Hr1G061610.1 | No alias | Unknown function | 0.03 | Orthogroups_2024-Update | |
| HORVU3Hr1G080120.11 | No alias | Unknown function | 0.03 | Orthogroups_2024-Update | |
| HORVU5Hr1G047290.1 | No alias | Unknown function | 0.03 | Orthogroups_2024-Update | |
| LOC_Os01g59890 | No alias | pentatricopeptide, putative, expressed | 0.02 | Orthogroups_2024-Update | |
| LOC_Os03g13230 | No alias | pentatricopeptide, putative, expressed | 0.03 | Orthogroups_2024-Update | |
| LOC_Os03g60200 | No alias | pentatricopeptide, putative, expressed | 0.02 | Orthogroups_2024-Update | |
| LOC_Os11g29360 | No alias | pentatricopeptide, putative, expressed | 0.03 | Orthogroups_2024-Update | |
| MA_59599g0010 | No alias | (at3g49170 : 646.0) embryo defective 2261 (EMB2261);... | 0.03 | Orthogroups_2024-Update | |
| MA_9360929g0010 | No alias | (at4g13650 : 669.0) Pentatricopeptide repeat (PPR)... | 0.04 | Orthogroups_2024-Update | |
| PSME_00011508-RA | No alias | (at2g27610 : 744.0) Tetratricopeptide repeat (TPR)-like... | 0.03 | Orthogroups_2024-Update | |
| PSME_00056153-RA | No alias | (at2g13600 : 519.0) Pentatricopeptide repeat (PPR)... | 0.03 | Orthogroups_2024-Update | |
| Potri.003G058700 | No alias | Tetratricopeptide repeat (TPR)-like superfamily protein | 0.02 | Orthogroups_2024-Update | |
| Potri.006G211400 | No alias | Pentatricopeptide repeat (PPR) superfamily protein | 0.03 | Orthogroups_2024-Update | |
| Potri.006G244500 | No alias | Tetratricopeptide repeat (TPR)-like superfamily protein | 0.02 | Orthogroups_2024-Update | |
| Potri.010G161800 | No alias | Pentatricopeptide repeat (PPR) superfamily protein | 0.03 | Orthogroups_2024-Update | |
| Potri.016G051300 | No alias | Pentatricopeptide repeat (PPR) superfamily protein | 0.02 | Orthogroups_2024-Update | |
| Potri.017G137200 | No alias | Tetratricopeptide repeat (TPR)-like superfamily protein | 0.02 | Orthogroups_2024-Update | |
| Seita.1G205700.1 | No alias | Unknown function | 0.03 | Orthogroups_2024-Update | |
| Seita.1G290500.1 | No alias | Unknown function | 0.03 | Orthogroups_2024-Update | |
| Seita.2G031700.1 | No alias | Unknown function | 0.04 | Orthogroups_2024-Update | |
| Seita.4G046900.1 | No alias | Unknown function | 0.03 | Orthogroups_2024-Update | |
| Seita.4G216600.1 | No alias | Unknown function | 0.04 | Orthogroups_2024-Update | |
| Seita.4G218400.1 | No alias | Unknown function | 0.04 | Orthogroups_2024-Update | |
| Seita.4G225800.1 | No alias | Unknown function | 0.03 | Orthogroups_2024-Update | |
| Seita.5G124400.1 | No alias | RNA editing factor *(OTP81) | 0.07 | Orthogroups_2024-Update | |
| Seita.6G130100.1 | No alias | Unknown function | 0.05 | Orthogroups_2024-Update | |
| Seita.9G477500.1 | No alias | Unknown function | 0.03 | Orthogroups_2024-Update | |
| Sobic.001G001200.1 | No alias | Unknown function | 0.02 | Orthogroups_2024-Update | |
| Sobic.001G069300.2 | No alias | RNA editing factor *(DEK36) | 0.02 | Orthogroups_2024-Update | |
| Sobic.001G151300.1 | No alias | Unknown function | 0.03 | Orthogroups_2024-Update | |
| Sobic.001G436600.3 | No alias | Unknown function | 0.02 | Orthogroups_2024-Update | |
| Sobic.002G034400.1 | No alias | Unknown function | 0.04 | Orthogroups_2024-Update | |
| Sobic.002G292300.2 | No alias | Unknown function | 0.03 | Orthogroups_2024-Update | |
| Sobic.003G030100.1 | No alias | RNA editing factor *(CWM1) | 0.02 | Orthogroups_2024-Update | |
| Sobic.003G182501.1 | No alias | Unknown function | 0.03 | Orthogroups_2024-Update | |
| Sobic.003G333200.1 | No alias | Unknown function | 0.04 | Orthogroups_2024-Update | |
| Sobic.004G025100.1 | No alias | Unknown function | 0.02 | Orthogroups_2024-Update | |
| Sobic.004G053100.1 | No alias | Unknown function | 0.02 | Orthogroups_2024-Update | |
| Sobic.004G141600.1 | No alias | Unknown function | 0.03 | Orthogroups_2024-Update | |
| Sobic.004G217900.2 | No alias | Unknown function | 0.02 | Orthogroups_2024-Update | |
| Sobic.004G266300.1 | No alias | Unknown function | 0.02 | Orthogroups_2024-Update | |
| Sobic.004G282000.1 | No alias | Unknown function | 0.03 | Orthogroups_2024-Update | |
| Sobic.004G290400.1 | No alias | Unknown function | 0.02 | Orthogroups_2024-Update | |
| Sobic.004G312000.1 | No alias | RNA editing factor *(CLB19) | 0.05 | Orthogroups_2024-Update | |
| Sobic.005G008400.2 | No alias | Unknown function | 0.03 | Orthogroups_2024-Update | |
| Sobic.005G110550.1 | No alias | Unknown function | 0.04 | Orthogroups_2024-Update | |
| Sobic.006G069100.3 | No alias | Unknown function | 0.03 | Orthogroups_2024-Update | |
| Sobic.006G146400.4 | No alias | RNA editing factor *(MEF12) | 0.04 | Orthogroups_2024-Update | |
| Sobic.006G146900.1 | No alias | Unknown function | 0.03 | Orthogroups_2024-Update | |
| Sobic.007G006800.3 | No alias | Unknown function | 0.03 | Orthogroups_2024-Update | |
| Sobic.007G208400.1 | No alias | RNA editing factor *(REME1) | 0.02 | Orthogroups_2024-Update | |
| Sobic.008G009000.1 | No alias | Unknown function | 0.02 | Orthogroups_2024-Update | |
| Sobic.008G041000.1 | No alias | Unknown function | 0.03 | Orthogroups_2024-Update | |
| Sobic.008G066900.1 | No alias | Unknown function | 0.03 | Orthogroups_2024-Update | |
| Sobic.008G179000.1 | No alias | Unknown function | 0.03 | Orthogroups_2024-Update | |
| Sobic.009G116400.4 | No alias | Unknown function | 0.04 | Orthogroups_2024-Update | |
| Sobic.009G136200.1 | No alias | RNA editing factor *(MEF32) | 0.02 | Orthogroups_2024-Update | |
| Sobic.009G155400.3 | No alias | Unknown function | 0.02 | Orthogroups_2024-Update | |
| Sobic.010G067000.1 | No alias | RNA editing factor *(MEF29) | 0.03 | Orthogroups_2024-Update | |
| Sobic.010G190900.1 | No alias | Unknown function | 0.02 | Orthogroups_2024-Update | |
| Sobic.010G258600.1 | No alias | Unknown function | 0.03 | Orthogroups_2024-Update | |
| Solyc01g081560 | No alias | LOW QUALITY:Pentatricopeptide repeat-containing protein... | 0.02 | Orthogroups_2024-Update | |
| Solyc01g094850 | No alias | Pentatricopeptide repeat superfamily protein, putative... | 0.02 | Orthogroups_2024-Update | |
| Solyc03g114660 | No alias | Pentatricopeptide repeat-containing protein (AHRD V3.3... | 0.03 | Orthogroups_2024-Update | |
| Solyc04g064750 | No alias | Pentatricopeptide repeat superfamily protein (AHRD V3.3... | 0.02 | Orthogroups_2024-Update | |
| Solyc10g008570 | No alias | Pentatricopeptide repeat-containing protein (AHRD V3.3... | 0.04 | Orthogroups_2024-Update | |
| Solyc11g011860 | No alias | Pentatricopeptide repeat-containing protein family (AHRD... | 0.02 | Orthogroups_2024-Update | |
| Sopen01g006160 | No alias | PPR repeat | 0.02 | Orthogroups_2024-Update | |
| Sopen02g033370 | No alias | PPR repeat family | 0.02 | Orthogroups_2024-Update | |
| Sopen03g002990 | No alias | PPR repeat family | 0.02 | Orthogroups_2024-Update | |
| Sopen06g035950 | No alias | PPR repeat family | 0.03 | Orthogroups_2024-Update | |
| Sopen09g033130 | No alias | PPR repeat family | 0.02 | Orthogroups_2024-Update | |
| Sopen11g001900 | No alias | PPR repeat | 0.02 | Orthogroups_2024-Update |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No GO annotation available for this sequence |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0003690 | double-stranded DNA binding | IEP | Predicted GO |
| MF | GO:0003872 | 6-phosphofructokinase activity | IEP | Predicted GO |
| MF | GO:0004332 | fructose-bisphosphate aldolase activity | IEP | Predicted GO |
| MF | GO:0004367 | glycerol-3-phosphate dehydrogenase [NAD+] activity | IEP | Predicted GO |
| MF | GO:0005102 | signaling receptor binding | IEP | Predicted GO |
| CC | GO:0005576 | extracellular region | IEP | Predicted GO |
| BP | GO:0005975 | carbohydrate metabolic process | IEP | Predicted GO |
| BP | GO:0006072 | glycerol-3-phosphate metabolic process | IEP | Predicted GO |
| BP | GO:0006082 | organic acid metabolic process | IEP | Predicted GO |
| BP | GO:0006090 | pyruvate metabolic process | IEP | Predicted GO |
| BP | GO:0006091 | generation of precursor metabolites and energy | IEP | Predicted GO |
| BP | GO:0006096 | glycolytic process | IEP | Predicted GO |
| BP | GO:0006163 | purine nucleotide metabolic process | IEP | Predicted GO |
| BP | GO:0006164 | purine nucleotide biosynthetic process | IEP | Predicted GO |
| BP | GO:0006165 | nucleoside diphosphate phosphorylation | IEP | Predicted GO |
| BP | GO:0006732 | coenzyme metabolic process | IEP | Predicted GO |
| BP | GO:0006733 | oxidoreduction coenzyme metabolic process | IEP | Predicted GO |
| BP | GO:0006753 | nucleoside phosphate metabolic process | IEP | Predicted GO |
| BP | GO:0006754 | ATP biosynthetic process | IEP | Predicted GO |
| BP | GO:0006757 | ATP generation from ADP | IEP | Predicted GO |
| MF | GO:0008083 | growth factor activity | IEP | Predicted GO |
| BP | GO:0008283 | cell proliferation | IEP | Predicted GO |
| MF | GO:0008443 | phosphofructokinase activity | IEP | Predicted GO |
| BP | GO:0009056 | catabolic process | IEP | Predicted GO |
| BP | GO:0009108 | coenzyme biosynthetic process | IEP | Predicted GO |
| BP | GO:0009117 | nucleotide metabolic process | IEP | Predicted GO |
| BP | GO:0009123 | nucleoside monophosphate metabolic process | IEP | Predicted GO |
| BP | GO:0009124 | nucleoside monophosphate biosynthetic process | IEP | Predicted GO |
| BP | GO:0009126 | purine nucleoside monophosphate metabolic process | IEP | Predicted GO |
| BP | GO:0009127 | purine nucleoside monophosphate biosynthetic process | IEP | Predicted GO |
| BP | GO:0009132 | nucleoside diphosphate metabolic process | IEP | Predicted GO |
| BP | GO:0009135 | purine nucleoside diphosphate metabolic process | IEP | Predicted GO |
| BP | GO:0009141 | nucleoside triphosphate metabolic process | IEP | Predicted GO |
| BP | GO:0009142 | nucleoside triphosphate biosynthetic process | IEP | Predicted GO |
| BP | GO:0009144 | purine nucleoside triphosphate metabolic process | IEP | Predicted GO |
| BP | GO:0009145 | purine nucleoside triphosphate biosynthetic process | IEP | Predicted GO |
| BP | GO:0009150 | purine ribonucleotide metabolic process | IEP | Predicted GO |
| BP | GO:0009152 | purine ribonucleotide biosynthetic process | IEP | Predicted GO |
| BP | GO:0009156 | ribonucleoside monophosphate biosynthetic process | IEP | Predicted GO |
| BP | GO:0009161 | ribonucleoside monophosphate metabolic process | IEP | Predicted GO |
| BP | GO:0009165 | nucleotide biosynthetic process | IEP | Predicted GO |
| BP | GO:0009166 | nucleotide catabolic process | IEP | Predicted GO |
| BP | GO:0009167 | purine ribonucleoside monophosphate metabolic process | IEP | Predicted GO |
| BP | GO:0009168 | purine ribonucleoside monophosphate biosynthetic process | IEP | Predicted GO |
| BP | GO:0009179 | purine ribonucleoside diphosphate metabolic process | IEP | Predicted GO |
| BP | GO:0009185 | ribonucleoside diphosphate metabolic process | IEP | Predicted GO |
| BP | GO:0009199 | ribonucleoside triphosphate metabolic process | IEP | Predicted GO |
| BP | GO:0009201 | ribonucleoside triphosphate biosynthetic process | IEP | Predicted GO |
| BP | GO:0009205 | purine ribonucleoside triphosphate metabolic process | IEP | Predicted GO |
| BP | GO:0009206 | purine ribonucleoside triphosphate biosynthetic process | IEP | Predicted GO |
| BP | GO:0009259 | ribonucleotide metabolic process | IEP | Predicted GO |
| BP | GO:0009260 | ribonucleotide biosynthetic process | IEP | Predicted GO |
| BP | GO:0016052 | carbohydrate catabolic process | IEP | Predicted GO |
| BP | GO:0016053 | organic acid biosynthetic process | IEP | Predicted GO |
| MF | GO:0016830 | carbon-carbon lyase activity | IEP | Predicted GO |
| MF | GO:0016832 | aldehyde-lyase activity | IEP | Predicted GO |
| BP | GO:0017144 | drug metabolic process | IEP | Predicted GO |
| BP | GO:0018130 | heterocycle biosynthetic process | IEP | Predicted GO |
| MF | GO:0019200 | carbohydrate kinase activity | IEP | Predicted GO |
| BP | GO:0019359 | nicotinamide nucleotide biosynthetic process | IEP | Predicted GO |
| BP | GO:0019362 | pyridine nucleotide metabolic process | IEP | Predicted GO |
| BP | GO:0019363 | pyridine nucleotide biosynthetic process | IEP | Predicted GO |
| BP | GO:0019438 | aromatic compound biosynthetic process | IEP | Predicted GO |
| BP | GO:0019439 | aromatic compound catabolic process | IEP | Predicted GO |
| BP | GO:0019637 | organophosphate metabolic process | IEP | Predicted GO |
| BP | GO:0019693 | ribose phosphate metabolic process | IEP | Predicted GO |
| BP | GO:0019752 | carboxylic acid metabolic process | IEP | Predicted GO |
| MF | GO:0030545 | receptor regulator activity | IEP | Predicted GO |
| BP | GO:0032787 | monocarboxylic acid metabolic process | IEP | Predicted GO |
| BP | GO:0034404 | nucleobase-containing small molecule biosynthetic process | IEP | Predicted GO |
| BP | GO:0034654 | nucleobase-containing compound biosynthetic process | IEP | Predicted GO |
| BP | GO:0034655 | nucleobase-containing compound catabolic process | IEP | Predicted GO |
| BP | GO:0042866 | pyruvate biosynthetic process | IEP | Predicted GO |
| BP | GO:0043436 | oxoacid metabolic process | IEP | Predicted GO |
| BP | GO:0044248 | cellular catabolic process | IEP | Predicted GO |
| BP | GO:0044270 | cellular nitrogen compound catabolic process | IEP | Predicted GO |
| BP | GO:0044281 | small molecule metabolic process | IEP | Predicted GO |
| BP | GO:0044283 | small molecule biosynthetic process | IEP | Predicted GO |
| BP | GO:0046031 | ADP metabolic process | IEP | Predicted GO |
| BP | GO:0046034 | ATP metabolic process | IEP | Predicted GO |
| BP | GO:0046168 | glycerol-3-phosphate catabolic process | IEP | Predicted GO |
| BP | GO:0046390 | ribose phosphate biosynthetic process | IEP | Predicted GO |
| BP | GO:0046394 | carboxylic acid biosynthetic process | IEP | Predicted GO |
| BP | GO:0046434 | organophosphate catabolic process | IEP | Predicted GO |
| BP | GO:0046496 | nicotinamide nucleotide metabolic process | IEP | Predicted GO |
| BP | GO:0046700 | heterocycle catabolic process | IEP | Predicted GO |
| BP | GO:0046939 | nucleotide phosphorylation | IEP | Predicted GO |
| MF | GO:0048018 | receptor ligand activity | IEP | Predicted GO |
| BP | GO:0051186 | cofactor metabolic process | IEP | Predicted GO |
| BP | GO:0051188 | cofactor biosynthetic process | IEP | Predicted GO |
| MF | GO:0051287 | NAD binding | IEP | Predicted GO |
| BP | GO:0052646 | alditol phosphate metabolic process | IEP | Predicted GO |
| BP | GO:0055086 | nucleobase-containing small molecule metabolic process | IEP | Predicted GO |
| MF | GO:0070008 | serine-type exopeptidase activity | IEP | Predicted GO |
| BP | GO:0072330 | monocarboxylic acid biosynthetic process | IEP | Predicted GO |
| BP | GO:0072521 | purine-containing compound metabolic process | IEP | Predicted GO |
| BP | GO:0072522 | purine-containing compound biosynthetic process | IEP | Predicted GO |
| BP | GO:0072524 | pyridine-containing compound metabolic process | IEP | Predicted GO |
| BP | GO:0072525 | pyridine-containing compound biosynthetic process | IEP | Predicted GO |
| BP | GO:0090407 | organophosphate biosynthetic process | IEP | Predicted GO |
| BP | GO:1901135 | carbohydrate derivative metabolic process | IEP | Predicted GO |
| BP | GO:1901136 | carbohydrate derivative catabolic process | IEP | Predicted GO |
| BP | GO:1901137 | carbohydrate derivative biosynthetic process | IEP | Predicted GO |
| BP | GO:1901292 | nucleoside phosphate catabolic process | IEP | Predicted GO |
| BP | GO:1901293 | nucleoside phosphate biosynthetic process | IEP | Predicted GO |
| BP | GO:1901361 | organic cyclic compound catabolic process | IEP | Predicted GO |
| BP | GO:1901362 | organic cyclic compound biosynthetic process | IEP | Predicted GO |
| BP | GO:1901575 | organic substance catabolic process | IEP | Predicted GO |
| InterPro domains | Description | Start | Stop |
|---|---|---|---|
| IPR002885 | Pentatricopeptide_repeat | 593 | 638 |
| IPR002885 | Pentatricopeptide_repeat | 389 | 436 |
| IPR002885 | Pentatricopeptide_repeat | 797 | 843 |
| IPR002885 | Pentatricopeptide_repeat | 222 | 270 |
| IPR002885 | Pentatricopeptide_repeat | 291 | 321 |
| IPR002885 | Pentatricopeptide_repeat | 566 | 586 |
| IPR002885 | Pentatricopeptide_repeat | 493 | 523 |
| IPR002885 | Pentatricopeptide_repeat | 699 | 726 |
| IPR002885 | Pentatricopeptide_repeat | 770 | 795 |
| No external refs found! |