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  5. LOC_Os04g46010

LOC_Os04g46010


Description : PPR repeat domain containing protein, putative, expressed


Gene families : OG_42_0000146 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000146_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Oryza release: LOC_Os04g46010
Cluster HCCA clusters: cluster_0129

Target Alias Description ECC score Gene Family Method Actions
420704 No alias PENTATRICOPEPTIDE REPEAT 596 0.02 Orthogroups_2024-Update
Glyma.13G297800 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 Orthogroups_2024-Update
HORVU2Hr1G093220.6 No alias splicing factor *(CRR16) 0.03 Orthogroups_2024-Update
Potri.002G139400 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.04 Orthogroups_2024-Update
Potri.014G050300 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.05 Orthogroups_2024-Update
Seita.1G351200.1 No alias Unknown function 0.01 Orthogroups_2024-Update
Solyc01g089870 No alias Pentatricopeptide repeat-containing family protein (AHRD... 0.03 Orthogroups_2024-Update
Sopen01g031100 No alias PPR repeat 0.02 Orthogroups_2024-Update
Sopen01g035710 No alias PPR repeat 0.03 Orthogroups_2024-Update
Sopen02g023200 No alias PPR repeat 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA InterProScan predictions
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Type GO Term Name Evidence Source
MF GO:0000049 tRNA binding IEP Predicted GO
MF GO:0004556 alpha-amylase activity IEP Predicted GO
MF GO:0004812 aminoacyl-tRNA ligase activity IEP Predicted GO
MF GO:0005319 lipid transporter activity IEP Predicted GO
CC GO:0005886 plasma membrane IEP Predicted GO
BP GO:0006298 mismatch repair IEP Predicted GO
BP GO:0006399 tRNA metabolic process IEP Predicted GO
BP GO:0006520 cellular amino acid metabolic process IEP Predicted GO
BP GO:0006869 lipid transport IEP Predicted GO
BP GO:0008272 sulfate transport IEP Predicted GO
MF GO:0015018 galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase activity IEP Predicted GO
MF GO:0015020 glucuronosyltransferase activity IEP Predicted GO
MF GO:0015116 sulfate transmembrane transporter activity IEP Predicted GO
MF GO:0016160 amylase activity IEP Predicted GO
MF GO:0016655 oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor IEP Predicted GO
MF GO:0016874 ligase activity IEP Predicted GO
MF GO:0016875 ligase activity, forming carbon-oxygen bonds IEP Predicted GO
MF GO:0019829 cation-transporting ATPase activity IEP Predicted GO
CC GO:0019898 extrinsic component of membrane IEP Predicted GO
MF GO:0022853 active ion transmembrane transporter activity IEP Predicted GO
MF GO:0030983 mismatched DNA binding IEP Predicted GO
BP GO:0034660 ncRNA metabolic process IEP Predicted GO
MF GO:0042625 ATPase coupled ion transmembrane transporter activity IEP Predicted GO
BP GO:0043038 amino acid activation IEP Predicted GO
BP GO:0043039 tRNA aminoacylation IEP Predicted GO
MF GO:0044769 ATPase activity, coupled to transmembrane movement of ions, rotational mechanism IEP Predicted GO
MF GO:0046933 proton-transporting ATP synthase activity, rotational mechanism IEP Predicted GO
MF GO:0051537 2 iron, 2 sulfur cluster binding IEP Predicted GO
BP GO:0061024 membrane organization IEP Predicted GO
BP GO:0072348 sulfur compound transport IEP Predicted GO
BP GO:0120009 intermembrane lipid transfer IEP Predicted GO
MF GO:0120013 intermembrane lipid transfer activity IEP Predicted GO
MF GO:0140101 catalytic activity, acting on a tRNA IEP Predicted GO
MF GO:1901682 sulfur compound transmembrane transporter activity IEP Predicted GO
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 390 418
IPR019734 TPR_repeat 285 310
IPR019734 TPR_repeat 425 451
IPR002885 Pentatricopeptide_repeat 234 273
IPR002885 Pentatricopeptide_repeat 179 224
No external refs found!