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  5. LOC_Os04g46240

LOC_Os04g46240


Description : AP2 domain containing protein, expressed


Gene families : OG_42_0000000 (Orthogroups_2024-Update) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Oryza release: LOC_Os04g46240
Cluster HCCA clusters: cluster_0112

Target Alias Description ECC score Gene Family Method Actions
A4A49_20472 No alias ethylene-responsive transcription factor 13 0.02 Orthogroups_2024-Update
A4A49_36962 No alias ethylene-responsive transcription factor erf003 0.03 Orthogroups_2024-Update
A4A49_38093 No alias ethylene-responsive transcription factor erf034 0.03 Orthogroups_2024-Update
Bradi2g60340 No alias C-repeat/DRE binding factor 2 0.04 Orthogroups_2024-Update
Brara.C00211.1 No alias subgroup ERF-IV/DREB2 transcription factor 0.03 Orthogroups_2024-Update
Cre16.g674890 No alias cytokinin response factor 2 0.02 Orthogroups_2024-Update
Glyma.03G017300 No alias related to AP2 11 0.02 Orthogroups_2024-Update
Glyma.04G251400 No alias Integrase-type DNA-binding superfamily protein 0.04 Orthogroups_2024-Update
Glyma.09G242600 No alias ethylene-responsive element binding factor 13 0.02 Orthogroups_2024-Update
Glyma.12G197700 No alias Integrase-type DNA-binding superfamily protein 0.03 Orthogroups_2024-Update
Glyma.16G040000 No alias Integrase-type DNA-binding superfamily protein 0.02 Orthogroups_2024-Update
Glyma.17G219700 No alias Integrase-type DNA-binding superfamily protein 0.03 Orthogroups_2024-Update
HORVU6Hr1G060140.1 No alias subgroup ERF-I transcription factor 0.02 Orthogroups_2024-Update
HORVU7Hr1G026940.1 No alias subgroup ERF-II-DEAR transcription factor 0.02 Orthogroups_2024-Update
Mp7g17020.1 No alias Dehydration-responsive element-binding protein 2C... 0.02 Orthogroups_2024-Update
PSME_00052454-RA No alias no hits & (original description: no original description) 0.02 Orthogroups_2024-Update
Potri.001G155700 No alias Integrase-type DNA-binding superfamily protein 0.02 Orthogroups_2024-Update
Pp1s130_106V6 No alias ap2 erf domain-containing transcription factor 0.02 Orthogroups_2024-Update
Pp1s15_189V6 No alias transcriptional factor 0.02 Orthogroups_2024-Update
Solyc02g093130 No alias AP2/EREBP transcription factor_1 0.03 Orthogroups_2024-Update
Sopen08g028640 No alias AP2 domain 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003700 DNA-binding transcription factor activity IEA InterProScan predictions
BP GO:0006355 regulation of transcription, DNA-templated IEA InterProScan predictions
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Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEP Predicted GO
MF GO:0004809 tRNA (guanine-N2-)-methyltransferase activity IEP Predicted GO
BP GO:0006396 RNA processing IEP Predicted GO
BP GO:0008033 tRNA processing IEP Predicted GO
MF GO:0008168 methyltransferase activity IEP Predicted GO
MF GO:0008170 N-methyltransferase activity IEP Predicted GO
MF GO:0008173 RNA methyltransferase activity IEP Predicted GO
MF GO:0008175 tRNA methyltransferase activity IEP Predicted GO
MF GO:0008757 S-adenosylmethionine-dependent methyltransferase activity IEP Predicted GO
MF GO:0016423 tRNA (guanine) methyltransferase activity IEP Predicted GO
MF GO:0016741 transferase activity, transferring one-carbon groups IEP Predicted GO
BP GO:0032259 methylation IEP Predicted GO
InterPro domains Description Start Stop
IPR001471 AP2/ERF_dom 139 189
No external refs found!