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  5. LOC_Os04g47040

LOC_Os04g47040


Description : anthocyanin regulatory Lc protein, putative, expressed


Gene families : OG_42_0001550 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001550_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Oryza release: LOC_Os04g47040
Cluster HCCA clusters: cluster_0118

Target Alias Description ECC score Gene Family Method Actions
Brara.I01388.1 No alias bHLH-type transcription factor 0.02 Orthogroups_2024-Update
Glyma.19G155300 No alias basic helix-loop-helix (bHLH) DNA-binding superfamily protein 0.02 Orthogroups_2024-Update
Potri.001G103600 No alias basic helix-loop-helix (bHLH) DNA-binding superfamily protein 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0046983 protein dimerization activity IEA InterProScan predictions
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Type GO Term Name Evidence Source
CC GO:0005618 cell wall IEP Predicted GO
CC GO:0005667 transcription factor complex IEP Predicted GO
MF GO:0016762 xyloglucan:xyloglucosyl transferase activity IEP Predicted GO
CC GO:0030312 external encapsulating structure IEP Predicted GO
CC GO:0048046 apoplast IEP Predicted GO
MF GO:0070403 NAD+ binding IEP Predicted GO
MF GO:2001070 starch binding IEP Predicted GO
InterPro domains Description Start Stop
IPR025610 MYC/MYB_N 21 202
IPR011598 bHLH_dom 384 429
No external refs found!