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  5. LOC_Os04g47580

LOC_Os04g47580


Description : cyclin, putative, expressed


Gene families : OG_42_0000120 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000120_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Oryza release: LOC_Os04g47580
Cluster HCCA clusters: cluster_0112

Target Alias Description ECC score Gene Family Method Actions
At1g47230 No alias Cyclin-A3-4 [Source:UniProtKB/Swiss-Prot;Acc:Q3ECW2] 0.03 Orthogroups_2024-Update
Glyma.17G237200 No alias Cyclin A3;1 0.02 Orthogroups_2024-Update
HORVU4Hr1G013320.1 No alias regulatory protein *(CYCA) of cell cycle 0.03 Orthogroups_2024-Update
Potri.002G010000 No alias CYCLIN B2;4 0.02 Orthogroups_2024-Update
Potri.006G035200 No alias Cyclin family protein 0.02 Orthogroups_2024-Update
Potri.009G093100 No alias CYCLIN A3;4 0.02 Orthogroups_2024-Update
Solyc12g088500 No alias cyclin A3_5 0.04 Orthogroups_2024-Update
Sopen10g028990 No alias Cyclin, N-terminal domain 0.02 Orthogroups_2024-Update
evm.model.contig_554.3 No alias (q40671|ccnb2_orysa : 240.0) G2/mitotic-specific... 0.01 Orthogroups_2024-Update

Type GO Term Name Evidence Source
CC GO:0005634 nucleus IEA InterProScan predictions
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Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEP Predicted GO
MF GO:0004003 ATP-dependent DNA helicase activity IEP Predicted GO
MF GO:0008026 ATP-dependent helicase activity IEP Predicted GO
MF GO:0008094 DNA-dependent ATPase activity IEP Predicted GO
MF GO:0008963 phospho-N-acetylmuramoyl-pentapeptide-transferase activity IEP Predicted GO
MF GO:0016780 phosphotransferase activity, for other substituted phosphate groups IEP Predicted GO
MF GO:0016790 thiolester hydrolase activity IEP Predicted GO
MF GO:0070035 purine NTP-dependent helicase activity IEP Predicted GO
InterPro domains Description Start Stop
IPR006671 Cyclin_N 158 283
IPR004367 Cyclin_C-dom 285 400
No external refs found!