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  5. LOC_Os04g49410

LOC_Os04g49410


Description : expansin precursor, putative, expressed


Gene families : OG_42_0000014 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000014_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Oryza release: LOC_Os04g49410
Cluster HCCA clusters: cluster_0129

Target Alias Description ECC score Gene Family Method Actions
231226 No alias expansin A9 0.03 Orthogroups_2024-Update
409954 No alias expansin A8 0.02 Orthogroups_2024-Update
91129 No alias expansin A15 0.02 Orthogroups_2024-Update
A4A49_20002 No alias expansin-a12 0.02 Orthogroups_2024-Update
A4A49_24822 No alias expansin-a10 0.02 Orthogroups_2024-Update
Brara.F03107.1 No alias alpha-class expansin 0.02 Orthogroups_2024-Update
Brara.J02891.1 No alias alpha-class expansin 0.02 Orthogroups_2024-Update
Glyma.06G021700 No alias expansin 11 0.03 Orthogroups_2024-Update
Glyma.18G265400 No alias expansin A23 0.02 Orthogroups_2024-Update
LOC_Os03g06010 No alias expansin precursor, putative, expressed 0.02 Orthogroups_2024-Update
MA_10434805g0030 No alias (at2g40610 : 365.0) member of Alpha-Expansin Gene... 0.03 Orthogroups_2024-Update
MA_4979g0010 No alias (q40636|expa2_orysa : 406.0) Expansin-A2 precursor... 0.02 Orthogroups_2024-Update
Mp1g24230.1 No alias alpha-class expansin 0.02 Orthogroups_2024-Update
Mp3g12300.2 No alias alpha-class expansin 0.02 Orthogroups_2024-Update
PSME_00000399-RA No alias (q7xud0|exp10_orysa : 316.0) Expansin-A10 precursor... 0.02 Orthogroups_2024-Update
PSME_00011357-RA No alias (at2g40610 : 390.0) member of Alpha-Expansin Gene... 0.03 Orthogroups_2024-Update
Potri.001G112866 No alias expansin A18 0.02 Orthogroups_2024-Update
Potri.006G086100 No alias Barwin-like endoglucanases superfamily protein 0.02 Orthogroups_2024-Update
Potri.008G088300 No alias expansin A1 0.02 Orthogroups_2024-Update
Potri.017G092700 No alias expansin A23 0.03 Orthogroups_2024-Update
Seita.5G062700.1 No alias alpha-class expansin 0.02 Orthogroups_2024-Update
Seita.7G029300.1 No alias alpha-class expansin 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0004222 metalloendopeptidase activity IEP Predicted GO
MF GO:0004527 exonuclease activity IEP Predicted GO
BP GO:0006334 nucleosome assembly IEP Predicted GO
MF GO:0008408 3'-5' exonuclease activity IEP Predicted GO
MF GO:0019843 rRNA binding IEP Predicted GO
BP GO:0034728 nucleosome organization IEP Predicted GO
MF GO:0043565 sequence-specific DNA binding IEP Predicted GO
BP GO:0065004 protein-DNA complex assembly IEP Predicted GO
BP GO:0071824 protein-DNA complex subunit organization IEP Predicted GO
InterPro domains Description Start Stop
IPR009009 RlpA-like_DPBB 68 153
IPR007117 Expansin_CBD 164 241
No external refs found!