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  5. LOC_Os04g49580

LOC_Os04g49580


Description : nucleolar complex protein, putative, expressed


Gene families : OG_42_0006909 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0006909_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Oryza release: LOC_Os04g49580
Cluster HCCA clusters: cluster_0017

Target Alias Description ECC score Gene Family Method Actions
Brara.I01017.1 No alias SSU processome assembly factor *(NOC4) 0.03 Orthogroups_2024-Update
Sobic.006G193300.1 No alias SSU processome assembly factor *(NOC4) 0.02 Orthogroups_2024-Update
Solyc10g074560 No alias Nucleolar complex 4 (AHRD V3.3 *** A0A0B0NPG2_GOSAR) 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0000413 protein peptidyl-prolyl isomerization IEP Predicted GO
MF GO:0003690 double-stranded DNA binding IEP Predicted GO
MF GO:0003755 peptidyl-prolyl cis-trans isomerase activity IEP Predicted GO
BP GO:0006270 DNA replication initiation IEP Predicted GO
BP GO:0006298 mismatch repair IEP Predicted GO
BP GO:0006811 ion transport IEP Predicted GO
BP GO:0006812 cation transport IEP Predicted GO
BP GO:0006813 potassium ion transport IEP Predicted GO
MF GO:0008097 5S rRNA binding IEP Predicted GO
MF GO:0015079 potassium ion transmembrane transporter activity IEP Predicted GO
MF GO:0016859 cis-trans isomerase activity IEP Predicted GO
MF GO:0017111 nucleoside-triphosphatase activity IEP Predicted GO
BP GO:0018193 peptidyl-amino acid modification IEP Predicted GO
BP GO:0018208 peptidyl-proline modification IEP Predicted GO
MF GO:0019843 rRNA binding IEP Predicted GO
BP GO:0030001 metal ion transport IEP Predicted GO
MF GO:0030983 mismatched DNA binding IEP Predicted GO
BP GO:0071805 potassium ion transmembrane transport IEP Predicted GO
InterPro domains Description Start Stop
IPR005612 CCAAT-binding_factor 330 490
No external refs found!