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  5. LOC_Os04g51430

LOC_Os04g51430


Description : retrotransposon protein, putative, unclassified, expressed


Gene families : OG_42_0000004 (Orthogroups_2024-Update) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Oryza release: LOC_Os04g51430
Cluster HCCA clusters: cluster_0071

Target Alias Description ECC score Gene Family Method Actions
A4A49_04775 No alias putative e3 ubiquitin ligase sud1 0.03 Orthogroups_2024-Update
HORVU0Hr1G011670.1 No alias Unknown function 0.02 Orthogroups_2024-Update
HORVU2Hr1G122960.1 No alias Unknown function 0.02 Orthogroups_2024-Update
HORVU7Hr1G038840.1 No alias Unknown function 0.02 Orthogroups_2024-Update
LOC_Os04g11350 No alias retrotransposon protein, putative, unclassified, expressed 0.03 Orthogroups_2024-Update
LOC_Os11g34050 No alias retrotransposon, putative, centromere-specific, expressed 0.03 Orthogroups_2024-Update
Solyc10g052420 No alias No description available 0.03 Orthogroups_2024-Update
Sopen00g009040 No alias Reverse transcriptase (RNA-dependent DNA polymerase) 0.03 Orthogroups_2024-Update
Sopen01g024920 No alias Reverse transcriptase (RNA-dependent DNA polymerase) 0.03 Orthogroups_2024-Update
Sopen02g001860 No alias hypothetical protein 0.03 Orthogroups_2024-Update
Sopen05g012930 No alias Integrase core domain 0.02 Orthogroups_2024-Update
Sopen08g004730 No alias Reverse transcriptase (RNA-dependent DNA polymerase) 0.02 Orthogroups_2024-Update
Sopen09g024920 No alias Reverse transcriptase (RNA-dependent DNA polymerase) 0.02 Orthogroups_2024-Update
Sopen11g009630 No alias Integrase core domain 0.02 Orthogroups_2024-Update
Sopen12g011680 No alias Reverse transcriptase (RNA-dependent DNA polymerase) 0.02 Orthogroups_2024-Update
evm.model.tig00021758.17 No alias (p31843|rrpo_oenbe : 98.2) RNA-directed DNA polymerase... 0.01 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0001522 pseudouridine synthesis IEP Predicted GO
MF GO:0003682 chromatin binding IEP Predicted GO
MF GO:0004332 fructose-bisphosphate aldolase activity IEP Predicted GO
CC GO:0005779 integral component of peroxisomal membrane IEP Predicted GO
CC GO:0009507 chloroplast IEP Predicted GO
CC GO:0009536 plastid IEP Predicted GO
MF GO:0009982 pseudouridine synthase activity IEP Predicted GO
BP GO:0016559 peroxisome fission IEP Predicted GO
MF GO:0016832 aldehyde-lyase activity IEP Predicted GO
MF GO:0016866 intramolecular transferase activity IEP Predicted GO
CC GO:0031231 intrinsic component of peroxisomal membrane IEP Predicted GO
CC GO:0031300 intrinsic component of organelle membrane IEP Predicted GO
CC GO:0031301 integral component of organelle membrane IEP Predicted GO
CC GO:0043227 membrane-bounded organelle IEP Predicted GO
CC GO:0043231 intracellular membrane-bounded organelle IEP Predicted GO
CC GO:0044438 microbody part IEP Predicted GO
CC GO:0044439 peroxisomal part IEP Predicted GO
BP GO:0048285 organelle fission IEP Predicted GO
InterPro domains Description Start Stop
IPR005162 Retrotrans_gag_dom 324 405
No external refs found!