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LOC_Os04g51700


Description : DNA ligase I, ATP-dependent family protein, expressed


Gene families : OG_42_0003659 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0003659_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Oryza release: LOC_Os04g51700
Cluster HCCA clusters: cluster_0068

Target Alias Description ECC score Gene Family Method Actions
Cre10.g433550 No alias DNA ligase IV 0.01 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003910 DNA ligase (ATP) activity IEA InterProScan predictions
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Type GO Term Name Evidence Source
MF GO:0003989 acetyl-CoA carboxylase activity IEP Predicted GO
MF GO:0005524 ATP binding IEP Predicted GO
CC GO:0005643 nuclear pore IEP Predicted GO
CC GO:0005694 chromosome IEP Predicted GO
BP GO:0006400 tRNA modification IEP Predicted GO
MF GO:0008081 phosphoric diester hydrolase activity IEP Predicted GO
MF GO:0016421 CoA carboxylase activity IEP Predicted GO
BP GO:0016579 protein deubiquitination IEP Predicted GO
MF GO:0016763 transferase activity, transferring pentosyl groups IEP Predicted GO
MF GO:0016885 ligase activity, forming carbon-carbon bonds IEP Predicted GO
MF GO:0019783 ubiquitin-like protein-specific protease activity IEP Predicted GO
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Predicted GO
MF GO:0036459 thiol-dependent ubiquitinyl hydrolase activity IEP Predicted GO
BP GO:0070646 protein modification by small protein removal IEP Predicted GO
BP GO:0070647 protein modification by small protein conjugation or removal IEP Predicted GO
MF GO:0101005 ubiquitinyl hydrolase activity IEP Predicted GO
InterPro domains Description Start Stop
IPR021536 DNA_ligase_IV_dom 20 51
No external refs found!