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  5. LOC_Os04g53620

LOC_Os04g53620


Description : ubiquitin family protein, putative, expressed


Gene families : OG_42_0000048 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000048_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Oryza release: LOC_Os04g53620
Cluster HCCA clusters: cluster_0049

Target Alias Description ECC score Gene Family Method Actions
101548 No alias ubiquitin 5 0.02 Orthogroups_2024-Update
173723 No alias polyubiquitin 10 0.02 Orthogroups_2024-Update
HORVU5Hr1G072680.1 No alias component *(eL40) of large ribosomal-subunit (LSU) proteome 0.02 Orthogroups_2024-Update
HORVU6Hr1G014970.1 No alias Unknown function 0.04 Orthogroups_2024-Update
HORVU6Hr1G016150.3 No alias UBQ ubiquitin-fold protein 0.03 Orthogroups_2024-Update
MA_41251g0030 No alias (at4g05320 : 844.0) One of five polyubiquitin genes in... 0.02 Orthogroups_2024-Update
MA_94077g0010 No alias (at5g03240 : 515.0) encodes ubiquitin that is attached... 0.02 Orthogroups_2024-Update
Potri.006G129600 No alias ubiquitin 4 0.02 Orthogroups_2024-Update
Pp1s17_265V6 No alias polyubiquitin containing 7 ubiquitin monomers 0.02 Orthogroups_2024-Update
Pp1s241_60V6 No alias ubiquitin fusion protein 0.02 Orthogroups_2024-Update
Pp1s4_496V6 No alias No description available 0.02 Orthogroups_2024-Update
Seita.2G207500.1 No alias RUB ubiquitin-fold protein 0.03 Orthogroups_2024-Update
Sobic.010G225300.2 No alias UBQ ubiquitin-fold protein 0.04 Orthogroups_2024-Update
Sobic.010G239500.6 No alias UBQ ubiquitin-fold protein 0.04 Orthogroups_2024-Update
Sopen07g032270 No alias Ubiquitin family 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA InterProScan predictions
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Type GO Term Name Evidence Source
CC GO:0000786 nucleosome IEP Predicted GO
BP GO:0006811 ion transport IEP Predicted GO
BP GO:0006820 anion transport IEP Predicted GO
BP GO:0008272 sulfate transport IEP Predicted GO
MF GO:0008483 transaminase activity IEP Predicted GO
MF GO:0008509 anion transmembrane transporter activity IEP Predicted GO
MF GO:0015075 ion transmembrane transporter activity IEP Predicted GO
MF GO:0015103 inorganic anion transmembrane transporter activity IEP Predicted GO
MF GO:0015116 sulfate transmembrane transporter activity IEP Predicted GO
MF GO:0015318 inorganic molecular entity transmembrane transporter activity IEP Predicted GO
BP GO:0015698 inorganic anion transport IEP Predicted GO
BP GO:0015985 energy coupled proton transport, down electrochemical gradient IEP Predicted GO
BP GO:0015986 ATP synthesis coupled proton transport IEP Predicted GO
MF GO:0016769 transferase activity, transferring nitrogenous groups IEP Predicted GO
CC GO:0032993 protein-DNA complex IEP Predicted GO
CC GO:0033177 proton-transporting two-sector ATPase complex, proton-transporting domain IEP Predicted GO
CC GO:0044815 DNA packaging complex IEP Predicted GO
CC GO:0045263 proton-transporting ATP synthase complex, coupling factor F(o) IEP Predicted GO
BP GO:0072348 sulfur compound transport IEP Predicted GO
MF GO:1901682 sulfur compound transmembrane transporter activity IEP Predicted GO
InterPro domains Description Start Stop
IPR000626 Ubiquitin_dom 318 389
IPR000626 Ubiquitin_dom 90 161
IPR000626 Ubiquitin_dom 242 313
IPR000626 Ubiquitin_dom 166 237
IPR000626 Ubiquitin_dom 14 85
No external refs found!