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  5. LOC_Os04g55080

LOC_Os04g55080


Description : cyclic nucleotide-gated ion channel, putative, expressed


Gene families : OG_42_0000108 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000108_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Oryza release: LOC_Os04g55080
Cluster HCCA clusters: cluster_0039

Target Alias Description ECC score Gene Family Method Actions
At1g19780 No alias Putative cyclic nucleotide-gated ion channel 8... 0.02 Orthogroups_2024-Update
Bradi2g20660 No alias cyclic nucleotide-gated cation channel 4 0.03 Orthogroups_2024-Update
LOC_Os06g33600 No alias cyclic nucleotide-gated ion channel 1, putative, expressed 0.03 Orthogroups_2024-Update
MA_175873g0010 No alias (at5g54250 : 805.0) member of Cyclic nucleotide gated... 0.02 Orthogroups_2024-Update
PSME_00005940-RA No alias (at5g15410 : 820.0) 'defense, no death' gene (DND1)... 0.02 Orthogroups_2024-Update
Pp1s68_102V6 No alias cyclic nucleotide and calmodulin-regulated ion channel 0.02 Orthogroups_2024-Update
Seita.1G014300.1 No alias cyclic nucleotide-gated cation channel *(CNGC) 0.03 Orthogroups_2024-Update
Seita.5G341100.1 No alias cyclic nucleotide-gated cation channel *(CNGC) 0.02 Orthogroups_2024-Update
Seita.8G054900.1 No alias cyclic nucleotide-gated cation channel *(CNGC) 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0005216 ion channel activity IEA InterProScan predictions
BP GO:0006811 ion transport IEA InterProScan predictions
CC GO:0016020 membrane IEA InterProScan predictions
BP GO:0055085 transmembrane transport IEA InterProScan predictions
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Type GO Term Name Evidence Source
CC GO:0005618 cell wall IEP Predicted GO
BP GO:0005991 trehalose metabolic process IEP Predicted GO
BP GO:0005992 trehalose biosynthetic process IEP Predicted GO
BP GO:0006888 ER to Golgi vesicle-mediated transport IEP Predicted GO
BP GO:0016192 vesicle-mediated transport IEP Predicted GO
MF GO:0016762 xyloglucan:xyloglucosyl transferase activity IEP Predicted GO
BP GO:0017004 cytochrome complex assembly IEP Predicted GO
CC GO:0030117 membrane coat IEP Predicted GO
CC GO:0030120 vesicle coat IEP Predicted GO
CC GO:0030127 COPII vesicle coat IEP Predicted GO
CC GO:0030312 external encapsulating structure IEP Predicted GO
BP GO:0044262 cellular carbohydrate metabolic process IEP Predicted GO
CC GO:0044433 cytoplasmic vesicle part IEP Predicted GO
BP GO:0046351 disaccharide biosynthetic process IEP Predicted GO
CC GO:0048046 apoplast IEP Predicted GO
BP GO:0048193 Golgi vesicle transport IEP Predicted GO
InterPro domains Description Start Stop
IPR005821 Ion_trans_dom 107 426
IPR000595 cNMP-bd_dom 522 611
No external refs found!