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  5. LOC_Os04g57440

LOC_Os04g57440


Description : oryzain beta chain precursor, putative, expressed


Gene families : OG_42_0000382 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000382_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Oryza release: LOC_Os04g57440
Cluster HCCA clusters: cluster_0047

Target Alias Description ECC score Gene Family Method Actions
139792 No alias xylem bark cysteine peptidase 3 0.02 Orthogroups_2024-Update
At1g47128 No alias RD21A [Source:UniProtKB/TrEMBL;Acc:A0A178WIH7] 0.03 Orthogroups_2024-Update
Brara.H02309.1 No alias C1-class subclass RD21/XCP thiol protease & Prgrammed... 0.02 Orthogroups_2024-Update
Brara.J00562.1 No alias C1-class subclass RD21/XCP thiol protease & EC_3.4... 0.02 Orthogroups_2024-Update
Glyma.14G085800 No alias Granulin repeat cysteine protease family protein 0.03 Orthogroups_2024-Update
LOC_Os01g73980 No alias xylem cysteine proteinase 2 precursor, putative, expressed 0.04 Orthogroups_2024-Update
LOC_Os05g01810 No alias xylem cysteine proteinase 2 precursor, putative, expressed 0.02 Orthogroups_2024-Update
PSME_00033017-RA No alias (at1g47128 : 547.0) cysteine proteinase precursor-like... 0.02 Orthogroups_2024-Update
Potri.001G302100 No alias Granulin repeat cysteine protease family protein 0.02 Orthogroups_2024-Update
Pp1s19_362V6 No alias cysteine protease 0.02 Orthogroups_2024-Update
Sobic.006G242000.1 No alias C1-class subclass RD21/XCP thiol protease & EC_3.4... 0.03 Orthogroups_2024-Update
Sobic.009G190600.1 No alias C1-class subclass XBCP3 cysteine protease & EC_3.4... 0.02 Orthogroups_2024-Update
Sopen12g030570 No alias Papain family cysteine protease 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
BP GO:0006508 proteolysis IEA InterProScan predictions
MF GO:0008234 cysteine-type peptidase activity IEA InterProScan predictions
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Type GO Term Name Evidence Source
CC GO:0000148 1,3-beta-D-glucan synthase complex IEP Predicted GO
MF GO:0003843 1,3-beta-D-glucan synthase activity IEP Predicted GO
MF GO:0004175 endopeptidase activity IEP Predicted GO
MF GO:0004298 threonine-type endopeptidase activity IEP Predicted GO
MF GO:0004813 alanine-tRNA ligase activity IEP Predicted GO
MF GO:0005544 calcium-dependent phospholipid binding IEP Predicted GO
CC GO:0005839 proteasome core complex IEP Predicted GO
BP GO:0006074 (1->3)-beta-D-glucan metabolic process IEP Predicted GO
BP GO:0006075 (1->3)-beta-D-glucan biosynthetic process IEP Predicted GO
BP GO:0006413 translational initiation IEP Predicted GO
BP GO:0006419 alanyl-tRNA aminoacylation IEP Predicted GO
BP GO:0008064 regulation of actin polymerization or depolymerization IEP Predicted GO
CC GO:0008290 F-actin capping protein complex IEP Predicted GO
BP GO:0010639 negative regulation of organelle organization IEP Predicted GO
BP GO:0019321 pentose metabolic process IEP Predicted GO
BP GO:0019566 arabinose metabolic process IEP Predicted GO
CC GO:0019773 proteasome core complex, alpha-subunit complex IEP Predicted GO
BP GO:0030832 regulation of actin filament length IEP Predicted GO
BP GO:0030833 regulation of actin filament polymerization IEP Predicted GO
BP GO:0030834 regulation of actin filament depolymerization IEP Predicted GO
BP GO:0030835 negative regulation of actin filament depolymerization IEP Predicted GO
BP GO:0030837 negative regulation of actin filament polymerization IEP Predicted GO
BP GO:0031333 negative regulation of protein complex assembly IEP Predicted GO
BP GO:0032271 regulation of protein polymerization IEP Predicted GO
BP GO:0032272 negative regulation of protein polymerization IEP Predicted GO
BP GO:0032535 regulation of cellular component size IEP Predicted GO
BP GO:0032956 regulation of actin cytoskeleton organization IEP Predicted GO
BP GO:0032970 regulation of actin filament-based process IEP Predicted GO
CC GO:0032991 protein-containing complex IEP Predicted GO
BP GO:0033043 regulation of organelle organization IEP Predicted GO
BP GO:0043242 negative regulation of protein complex disassembly IEP Predicted GO
BP GO:0043244 regulation of protein complex disassembly IEP Predicted GO
BP GO:0043254 regulation of protein complex assembly IEP Predicted GO
BP GO:0044087 regulation of cellular component biogenesis IEP Predicted GO
CC GO:0044459 plasma membrane part IEP Predicted GO
BP GO:0046373 L-arabinose metabolic process IEP Predicted GO
MF GO:0046556 alpha-L-arabinofuranosidase activity IEP Predicted GO
BP GO:0051016 barbed-end actin filament capping IEP Predicted GO
BP GO:0051128 regulation of cellular component organization IEP Predicted GO
BP GO:0051129 negative regulation of cellular component organization IEP Predicted GO
BP GO:0051493 regulation of cytoskeleton organization IEP Predicted GO
BP GO:0051494 negative regulation of cytoskeleton organization IEP Predicted GO
BP GO:0051603 proteolysis involved in cellular protein catabolic process IEP Predicted GO
BP GO:0051693 actin filament capping IEP Predicted GO
MF GO:0070003 threonine-type peptidase activity IEP Predicted GO
BP GO:0090066 regulation of anatomical structure size IEP Predicted GO
CC GO:0098797 plasma membrane protein complex IEP Predicted GO
BP GO:0110053 regulation of actin filament organization IEP Predicted GO
BP GO:1901879 regulation of protein depolymerization IEP Predicted GO
BP GO:1901880 negative regulation of protein depolymerization IEP Predicted GO
BP GO:1902903 regulation of supramolecular fiber organization IEP Predicted GO
BP GO:1902904 negative regulation of supramolecular fiber organization IEP Predicted GO
InterPro domains Description Start Stop
IPR000668 Peptidase_C1A_C 141 357
IPR013201 Prot_inhib_I29 70 113
IPR000118 Granulin 397 443
No external refs found!