LOC_Os04g58240

Description : expressed protein

Gene families : OG_42_0001289 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001289_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Oryza release: LOC_Os04g58240
Cluster	HCCA clusters: cluster_0130

Target	Alias	Description	ECC score	Gene Family Method	Actions
MA_10435137g0010	No alias	(at2g40060 : 155.0) Clathrin light chain protein;...	0.02	Orthogroups_2024-Update
Potri.004G040100	No alias	Clathrin light chain protein	0.03	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0005198	structural molecule activity	IEA	InterProScan predictions
CC	GO:0005575	cellular_component	None	Extended
BP	GO:0006810	transport	None	Extended
BP	GO:0006886	intracellular protein transport	IEA	InterProScan predictions
BP	GO:0008104	protein localization	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0015031	protein transport	None	Extended
BP	GO:0015833	peptide transport	None	Extended
BP	GO:0016192	vesicle-mediated transport	IEA	InterProScan predictions
CC	GO:0030117	membrane coat	None	Extended
CC	GO:0030118	clathrin coat	None	Extended
CC	GO:0030120	vesicle coat	None	Extended
CC	GO:0030125	clathrin vesicle coat	None	Extended
CC	GO:0030130	clathrin coat of trans-Golgi network vesicle	IEA	InterProScan predictions
CC	GO:0030132	clathrin coat of coated pit	IEA	InterProScan predictions
CC	GO:0032991	protein-containing complex	None	Extended
BP	GO:0033036	macromolecule localization	None	Extended
BP	GO:0042886	amide transport	None	Extended
CC	GO:0044422	organelle part	None	Extended
CC	GO:0044424	intracellular part	None	Extended
CC	GO:0044425	membrane part	None	Extended
CC	GO:0044431	Golgi apparatus part	None	Extended
CC	GO:0044433	cytoplasmic vesicle part	None	Extended
CC	GO:0044444	cytoplasmic part	None	Extended
CC	GO:0044446	intracellular organelle part	None	Extended
CC	GO:0044459	plasma membrane part	None	Extended
CC	GO:0044464	cell part	None	Extended
BP	GO:0045184	establishment of protein localization	None	Extended
BP	GO:0046907	intracellular transport	None	Extended
BP	GO:0051179	localization	None	Extended
BP	GO:0051234	establishment of localization	None	Extended
BP	GO:0051641	cellular localization	None	Extended
BP	GO:0051649	establishment of localization in cell	None	Extended
BP	GO:0071702	organic substance transport	None	Extended
BP	GO:0071705	nitrogen compound transport	None	Extended
CC	GO:0098796	membrane protein complex	None	Extended
CC	GO:0098797	plasma membrane protein complex	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0004611	phosphoenolpyruvate carboxykinase activity	IEP	Predicted GO
BP	GO:0005984	disaccharide metabolic process	IEP	Predicted GO
BP	GO:0005991	trehalose metabolic process	IEP	Predicted GO
BP	GO:0005992	trehalose biosynthetic process	IEP	Predicted GO
BP	GO:0006099	tricarboxylic acid cycle	IEP	Predicted GO
BP	GO:0006101	citrate metabolic process	IEP	Predicted GO
BP	GO:0006887	exocytosis	IEP	Predicted GO
MF	GO:0008964	phosphoenolpyruvate carboxylase activity	IEP	Predicted GO
BP	GO:0009311	oligosaccharide metabolic process	IEP	Predicted GO
BP	GO:0009312	oligosaccharide biosynthetic process	IEP	Predicted GO
BP	GO:0015977	carbon fixation	IEP	Predicted GO
MF	GO:0016831	carboxy-lyase activity	IEP	Predicted GO
MF	GO:0016872	intramolecular lyase activity	IEP	Predicted GO
BP	GO:0016999	antibiotic metabolic process	IEP	Predicted GO
BP	GO:0032940	secretion by cell	IEP	Predicted GO
BP	GO:0046351	disaccharide biosynthetic process	IEP	Predicted GO
BP	GO:0046903	secretion	IEP	Predicted GO
BP	GO:0072350	tricarboxylic acid metabolic process	IEP	Predicted GO

InterPro domains	Description	Start	Stop
IPR000996	Clathrin_L-chain	105	241

External Links

No external refs found!

LOC_Os04g58240

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation