LOC_Os05g05230

Description : expressed protein

Gene families : OG_42_0000148 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000148_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Oryza release: LOC_Os05g05230
Cluster	HCCA clusters: cluster_0126

Target	Alias	Description	ECC score	Gene Family Method
At4g31900	No alias	CHD3-type chromatin-remodeling factor CHR7...	0.03	Orthogroups_2024-Update
Bradi2g56870	No alias	chromatin remodeling factor CHD3 (PICKLE)	0.03	Orthogroups_2024-Update
LOC_Os06g08480	No alias	CHD3-type chromatin-remodeling factor PICKLE, putative, expressed	0.04	Orthogroups_2024-Update
MA_42406g0010	No alias	(at5g66750 : 700.0) Protein is similar to SWI2/SNF2...	0.02	Orthogroups_2024-Update
PSME_00036208-RA	No alias	(at2g28290 : 200.0) Encodes a SWI2/SNF2-like protein in...	0.03	Orthogroups_2024-Update
Potri.008G195900	No alias	P-loop containing nucleoside triphosphate hydrolases...	0.02	Orthogroups_2024-Update
Potri.010G091200	No alias	Homeotic gene regulator	0.02	Orthogroups_2024-Update
Potri.018G021100	No alias	chromatin remodeling factor CHD3 (PICKLE)	0.04	Orthogroups_2024-Update
Pp1s47_44V6	No alias	chromatin remodeling complex subunit	0.02	Orthogroups_2024-Update
Pp1s54_314V6	No alias	snf2-family atp dependent chromatin remodeling factor snf21	0.02	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	None	Extended
MF	GO:0005524	ATP binding	IEA	InterProScan predictions
MF	GO:0008144	drug binding	None	Extended
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0042393	histone binding	IEA	InterProScan predictions
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

Type	GO Term	Name	Evidence	Source
BP	GO:0016579	protein deubiquitination	IEP	Predicted GO
BP	GO:0070646	protein modification by small protein removal	IEP	Predicted GO
BP	GO:0070647	protein modification by small protein conjugation or removal	IEP	Predicted GO

InterPro domains	Description	Start	Stop
IPR001650	Helicase_C	748	861
IPR029295	SnAC	941	1014
IPR000330	SNF2_N	457	729

External Links

No external refs found!