LOC_Os05g05780

Description : chromatin-remodeling complex ATPase chain, putative, expressed

Gene families : OG_42_0000148 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000148_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Oryza release: LOC_Os05g05780
Cluster	HCCA clusters: cluster_0107

Target	Alias	Description	ECC score	Gene Family Method
102849	No alias	Homeotic gene regulator	0.03	Orthogroups_2024-Update
130534	No alias	chromatin remodeling 4	0.02	Orthogroups_2024-Update
164481	No alias	P-loop containing nucleoside triphosphate hydrolases...	0.03	Orthogroups_2024-Update
440203	No alias	chromatin-remodeling protein 11	0.02	Orthogroups_2024-Update
Bradi1g10360	No alias	chromatin remodeling 1	0.03	Orthogroups_2024-Update
Bradi1g47367	No alias	chromatin remodeling factor CHD3 (PICKLE)	0.03	Orthogroups_2024-Update
Bradi1g78440	No alias	SNF2 domain-containing protein / helicase...	0.02	Orthogroups_2024-Update
Brara.I04444.1	No alias	CHD3-type chromatin remodeling factor *(PKL/PKR)	0.02	Orthogroups_2024-Update
Cre03.g158550	No alias	chromatin remodeling factor CHD3 (PICKLE)	0.01	Orthogroups_2024-Update
GRMZM2G049168	No alias	SNF2 domain-containing protein / helicase...	0.02	Orthogroups_2024-Update
GRMZM2G467799	No alias	P-loop containing nucleoside triphosphate hydrolases...	0.03	Orthogroups_2024-Update
Glyma.14G033600	No alias	chromatin remodeling 5	0.03	Orthogroups_2024-Update
Glyma.17G022300	No alias	P-loop containing nucleoside triphosphate hydrolases...	0.02	Orthogroups_2024-Update
HORVU2Hr1G022450.1	No alias	component *(CHR5) of SAGA transcription co-activator...	0.02	Orthogroups_2024-Update
HORVU3Hr1G012850.1	No alias	ATPase component *(CHR11/CHR17) of ISWI chromatin...	0.02	Orthogroups_2024-Update
Kfl00030_0270	kfl00030_0270_v1.1	(at5g66750 : 640.0) Protein is similar to SWI2/SNF2...	0.01	Orthogroups_2024-Update
Mp1g05480.1	No alias	chromatin remodeling factor (Chd1). component CHR5 of...	0.02	Orthogroups_2024-Update
Mp2g26680.1	No alias	CHD3-type chromatin-remodeling factor PICKLE...	0.05	Orthogroups_2024-Update
PSME_00000429-RA	No alias	(at2g28290 : 480.0) Encodes a SWI2/SNF2-like protein in...	0.02	Orthogroups_2024-Update
PSME_00001593-RA	No alias	(at2g13370 : 1311.0) chromatin remodeling 5 (CHR5);...	0.02	Orthogroups_2024-Update
PSME_00009909-RA	No alias	(at2g25170 : 296.0) Encodes a SWI/SWF nuclear-localized...	0.02	Orthogroups_2024-Update
Potri.019G129900	No alias	chromatin remodeling 1	0.02	Orthogroups_2024-Update
Pp1s235_76V6	No alias	chromatin remodeling complex subunit	0.02	Orthogroups_2024-Update
Sobic.002G404700.1	No alias	CHD1-type chromatin remodeling factor *(CHR5) &...	0.03	Orthogroups_2024-Update
Sobic.010G065300.1	No alias	CHD3-type chromatin remodeling factor *(PKL/PKR)	0.03	Orthogroups_2024-Update
Solyc01g090650	No alias	No description available	0.02	Orthogroups_2024-Update
Sopen02g013810	No alias	SNF2 family N-terminal domain	0.02	Orthogroups_2024-Update
Sopen02g017710	No alias	SNF2 family N-terminal domain	0.04	Orthogroups_2024-Update
Sopen08g010020	No alias	SNF2 family N-terminal domain	0.02	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	IEA	InterProScan predictions
MF	GO:0003682	chromatin binding	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005524	ATP binding	IEA	InterProScan predictions
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	IEA	InterProScan predictions
BP	GO:0006325	chromatin organization	None	Extended
BP	GO:0006338	chromatin remodeling	IEA	InterProScan predictions
MF	GO:0008144	drug binding	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016043	cellular component organization	None	Extended
MF	GO:0016787	hydrolase activity	None	Extended
MF	GO:0016817	hydrolase activity, acting on acid anhydrides	None	Extended
MF	GO:0016818	hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides	IEA	InterProScan predictions
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0031491	nucleosome binding	IEA	InterProScan predictions
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
BP	GO:0043044	ATP-dependent chromatin remodeling	IEA	InterProScan predictions
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
CC	GO:0044424	intracellular part	None	Extended
CC	GO:0044464	cell part	None	Extended
MF	GO:0044877	protein-containing complex binding	None	Extended
BP	GO:0071840	cellular component organization or biogenesis	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

Toggle parental

Type	GO Term	Name	Evidence	Source
MF	GO:0000155	phosphorelay sensor kinase activity	IEP	Predicted GO
MF	GO:0003852	2-isopropylmalate synthase activity	IEP	Predicted GO
MF	GO:0003880	protein C-terminal carboxyl O-methyltransferase activity	IEP	Predicted GO
MF	GO:0003887	DNA-directed DNA polymerase activity	IEP	Predicted GO
MF	GO:0004671	protein C-terminal S-isoprenylcysteine carboxyl O-methyltransferase activity	IEP	Predicted GO
MF	GO:0004673	protein histidine kinase activity	IEP	Predicted GO
MF	GO:0004674	protein serine/threonine kinase activity	IEP	Predicted GO
MF	GO:0004888	transmembrane signaling receptor activity	IEP	Predicted GO
MF	GO:0004970	ionotropic glutamate receptor activity	IEP	Predicted GO
MF	GO:0005230	extracellular ligand-gated ion channel activity	IEP	Predicted GO
MF	GO:0005509	calcium ion binding	IEP	Predicted GO
BP	GO:0006479	protein methylation	IEP	Predicted GO
BP	GO:0006481	C-terminal protein methylation	IEP	Predicted GO
BP	GO:0006551	leucine metabolic process	IEP	Predicted GO
MF	GO:0008066	glutamate receptor activity	IEP	Predicted GO
BP	GO:0008213	protein alkylation	IEP	Predicted GO
MF	GO:0008276	protein methyltransferase activity	IEP	Predicted GO
MF	GO:0008536	Ran GTPase binding	IEP	Predicted GO
BP	GO:0009081	branched-chain amino acid metabolic process	IEP	Predicted GO
BP	GO:0009082	branched-chain amino acid biosynthetic process	IEP	Predicted GO
BP	GO:0009098	leucine biosynthetic process	IEP	Predicted GO
MF	GO:0010340	carboxyl-O-methyltransferase activity	IEP	Predicted GO
MF	GO:0015095	magnesium ion transmembrane transporter activity	IEP	Predicted GO
MF	GO:0015276	ligand-gated ion channel activity	IEP	Predicted GO
BP	GO:0015693	magnesium ion transport	IEP	Predicted GO
CC	GO:0016021	integral component of membrane	IEP	Predicted GO
MF	GO:0016775	phosphotransferase activity, nitrogenous group as acceptor	IEP	Predicted GO
MF	GO:0016832	aldehyde-lyase activity	IEP	Predicted GO
MF	GO:0017016	Ras GTPase binding	IEP	Predicted GO
BP	GO:0018410	C-terminal protein amino acid modification	IEP	Predicted GO
BP	GO:0022406	membrane docking	IEP	Predicted GO
MF	GO:0022824	transmitter-gated ion channel activity	IEP	Predicted GO
MF	GO:0022834	ligand-gated channel activity	IEP	Predicted GO
MF	GO:0022835	transmitter-gated channel activity	IEP	Predicted GO
MF	GO:0030594	neurotransmitter receptor activity	IEP	Predicted GO
MF	GO:0031267	small GTPase binding	IEP	Predicted GO
MF	GO:0034061	DNA polymerase activity	IEP	Predicted GO
MF	GO:0038023	signaling receptor activity	IEP	Predicted GO
MF	GO:0043015	gamma-tubulin binding	IEP	Predicted GO
BP	GO:0043414	macromolecule methylation	IEP	Predicted GO
BP	GO:0043687	post-translational protein modification	IEP	Predicted GO
MF	GO:0046912	transferase activity, transferring acyl groups, acyl groups converted into alkyl on transfer	IEP	Predicted GO
BP	GO:0048278	vesicle docking	IEP	Predicted GO
BP	GO:0051640	organelle localization	IEP	Predicted GO
BP	GO:0051641	cellular localization	IEP	Predicted GO
MF	GO:0051998	protein carboxyl O-methyltransferase activity	IEP	Predicted GO
MF	GO:0060089	molecular transducer activity	IEP	Predicted GO
BP	GO:0070838	divalent metal ion transport	IEP	Predicted GO
BP	GO:0072511	divalent inorganic cation transport	IEP	Predicted GO
MF	GO:0098599	palmitoyl hydrolase activity	IEP	Predicted GO
BP	GO:0140056	organelle localization by membrane tethering	IEP	Predicted GO

InterPro domains	Description	Start	Stop
IPR001650	Helicase_C	588	700
IPR000330	SNF2_N	298	565
IPR015195	SLIDE	991	1101
IPR015194	ISWI_HAND-dom	850	930

External Links

No external refs found!

LOC_Os05g05780

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation