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  5. LOC_Os05g11414

LOC_Os05g11414


Description : OsMADS58 - MADS-box family gene with MIKCc type-box, expressed


Gene families : OG_42_0000009 (Orthogroups_2024-Update) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Oryza release: LOC_Os05g11414
Cluster HCCA clusters: cluster_0123

Target Alias Description ECC score Gene Family Method Actions
A4A49_22632 No alias floral homeotic protein agamous 0.02 Orthogroups_2024-Update
A4A49_27621 No alias agamous-like mads-box protein agl9 0.02 Orthogroups_2024-Update
A4A49_29655 No alias floral homeotic protein globosa 0.02 Orthogroups_2024-Update
At1g22130 No alias Agamous-like MADS-box protein AGL104... 0.02 Orthogroups_2024-Update
At1g24260 No alias At1g24260 [Source:UniProtKB/TrEMBL;Acc:B4F7R9] 0.02 Orthogroups_2024-Update
At1g77950 No alias AGAMOUS-like 67 [Source:UniProtKB/TrEMBL;Acc:F4I8L6] 0.03 Orthogroups_2024-Update
At2g24840 No alias Agamous-like MADS-box protein AGL61... 0.03 Orthogroups_2024-Update
Bradi1g69890 No alias K-box region and MADS-box transcription factor family protein 0.02 Orthogroups_2024-Update
Bradi3g41260 No alias K-box region and MADS-box transcription factor family protein 0.02 Orthogroups_2024-Update
Brara.I02295.1 No alias MADS/AGL-type transcription factor 0.02 Orthogroups_2024-Update
Brara.I02486.1 No alias MADS/AGL-type transcription factor 0.02 Orthogroups_2024-Update
Brara.I03965.1 No alias Unknown function 0.02 Orthogroups_2024-Update
Brara.J00749.1 No alias MADS/AGL-type transcription factor 0.02 Orthogroups_2024-Update
Brara.J01588.1 No alias component *(PISTILLATA) of AP3-PISTILLATA organ-identity... 0.02 Orthogroups_2024-Update
Brara.K00198.1 No alias MADS/AGL-type transcription factor 0.02 Orthogroups_2024-Update
GRMZM2G018589 No alias K-box region and MADS-box transcription factor family protein 0.02 Orthogroups_2024-Update
GRMZM5G878490 No alias AGAMOUS-like 62 0.02 Orthogroups_2024-Update
Glyma.03G019300 No alias AGAMOUS-like 20 0.02 Orthogroups_2024-Update
Glyma.05G227300 No alias AGAMOUS-like 62 0.03 Orthogroups_2024-Update
Glyma.08G250800 No alias AGAMOUS-like 8 0.03 Orthogroups_2024-Update
Glyma.08G282500 No alias AGAMOUS-like 29 0.03 Orthogroups_2024-Update
Glyma.09G266400 No alias AGAMOUS-like 6 0.03 Orthogroups_2024-Update
Glyma.10G084700 No alias AGAMOUS-like 62 0.03 Orthogroups_2024-Update
Glyma.10G085600 No alias AGAMOUS-like 62 0.03 Orthogroups_2024-Update
Glyma.11G252300 No alias K-box region and MADS-box transcription factor family protein 0.03 Orthogroups_2024-Update
Glyma.13G034100 No alias K-box region and MADS-box transcription factor family protein 0.03 Orthogroups_2024-Update
Glyma.15G088600 No alias K-box region and MADS-box transcription factor family protein 0.02 Orthogroups_2024-Update
HORVU1Hr1G008300.3 No alias MADS/AGL-type transcription factor 0.02 Orthogroups_2024-Update
HORVU3Hr1G026650.1 No alias MADS/AGL-type transcription factor 0.02 Orthogroups_2024-Update
LOC_Os04g49150 No alias OsMADS17 - MADS-box family gene with MIKCc type-box, expressed 0.02 Orthogroups_2024-Update
LOC_Os08g38590 No alias OsMADS62 - MADS-box family gene with MIKC* type-box, expressed 0.02 Orthogroups_2024-Update
LOC_Os09g32948 No alias OsMADS8 - MADS-box family gene with MIKCc type-box, expressed 0.03 Orthogroups_2024-Update
LOC_Os10g39130 No alias OsMADS56 - MADS-box family gene with MIKCc type-box, expressed 0.03 Orthogroups_2024-Update
MA_95674g0010 No alias (at2g45660 : 104.0) Controls flowering and is required... 0.03 Orthogroups_2024-Update
Mp4g12490.1 No alias transcription factor (MADS/AGL) 0.03 Orthogroups_2024-Update
Potri.004G002400 No alias AGAMOUS-like 62 0.02 Orthogroups_2024-Update
Potri.007G073000 No alias K-box region and MADS-box transcription factor family protein 0.02 Orthogroups_2024-Update
Pp1s163_73V6 No alias mikc* mads-box transcription factor 0.02 Orthogroups_2024-Update
Pp1s267_56V6 No alias agamous-like protein 0.03 Orthogroups_2024-Update
Seita.1G273400.1 No alias regulatory protein *(SEPALLATA) of floral meristem... 0.03 Orthogroups_2024-Update
Sobic.007G192900.1 No alias MADS/AGL-type transcription factor 0.04 Orthogroups_2024-Update
Solyc01g093960 No alias MADS-box transcription factor (AHRD V3.3 *** A0A072TNM9_MEDTR) 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA InterProScan predictions
MF GO:0003700 DNA-binding transcription factor activity IEA InterProScan predictions
CC GO:0005634 nucleus IEA InterProScan predictions
BP GO:0006355 regulation of transcription, DNA-templated IEA InterProScan predictions
MF GO:0046983 protein dimerization activity IEA InterProScan predictions
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Type GO Term Name Evidence Source
MF GO:0001882 nucleoside binding IEP Predicted GO
MF GO:0001883 purine nucleoside binding IEP Predicted GO
MF GO:0003924 GTPase activity IEP Predicted GO
MF GO:0005525 GTP binding IEP Predicted GO
BP GO:0006520 cellular amino acid metabolic process IEP Predicted GO
MF GO:0019001 guanyl nucleotide binding IEP Predicted GO
MF GO:0032549 ribonucleoside binding IEP Predicted GO
MF GO:0032550 purine ribonucleoside binding IEP Predicted GO
MF GO:0032561 guanyl ribonucleotide binding IEP Predicted GO
InterPro domains Description Start Stop
IPR002487 TF_Kbox 128 213
IPR002100 TF_MADSbox 52 99
No external refs found!