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  5. LOC_Os05g11700

LOC_Os05g11700


Description : PPR repeat containing protein, expressed


Gene families : OG_42_0008911 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0008911_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Oryza release: LOC_Os05g11700
Cluster HCCA clusters: cluster_0057

Target Alias Description ECC score Gene Family Method Actions
Brara.H00135.1 No alias Unknown function 0.02 Orthogroups_2024-Update
GRMZM2G127015 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003916 DNA topoisomerase activity IEP Predicted GO
CC GO:0005875 microtubule associated complex IEP Predicted GO
BP GO:0006265 DNA topological change IEP Predicted GO
BP GO:0006397 mRNA processing IEP Predicted GO
CC GO:0030286 dynein complex IEP Predicted GO
MF GO:0043565 sequence-specific DNA binding IEP Predicted GO
CC GO:0044430 cytoskeletal part IEP Predicted GO
BP GO:0071103 DNA conformation change IEP Predicted GO
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 229 258
IPR002885 Pentatricopeptide_repeat 194 222
IPR002885 Pentatricopeptide_repeat 81 130
IPR002885 Pentatricopeptide_repeat 260 308
IPR002885 Pentatricopeptide_repeat 150 182
No external refs found!