1. Home
  2. Species
  3. Oryza sativa
  4. Sequence
  5. LOC_Os05g12130

LOC_Os05g12130


Description : EMB2261, putative, expressed


Gene families : OG_42_0000001 (Orthogroups_2024-Update) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Oryza release: LOC_Os05g12130
Cluster HCCA clusters: cluster_0086

Target Alias Description ECC score Gene Family Method Actions
123655 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.02 Orthogroups_2024-Update
171135 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Orthogroups_2024-Update
442088 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.02 Orthogroups_2024-Update
84339 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.02 Orthogroups_2024-Update
AC203841.3_FG002 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 Orthogroups_2024-Update
At1g77170 No alias Pentatricopeptide repeat-containing protein At1g77170,... 0.03 Orthogroups_2024-Update
At2g03380 No alias Pentatricopeptide repeat-containing protein At2g03380,... 0.03 Orthogroups_2024-Update
At5g59200 No alias Putative pentatricopeptide repeat-containing protein... 0.03 Orthogroups_2024-Update
Bradi2g55230 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Orthogroups_2024-Update
Bradi3g41651 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Orthogroups_2024-Update
Bradi3g59950 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Orthogroups_2024-Update
Brara.I04699.1 No alias RNA editing factor *(MEF21) 0.04 Orthogroups_2024-Update
GRMZM2G123014 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 Orthogroups_2024-Update
GRMZM2G158839 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 Orthogroups_2024-Update
GRMZM2G423538 No alias Pentatricopeptide repeat (PPR-like) superfamily protein 0.02 Orthogroups_2024-Update
GRMZM2G455587 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Orthogroups_2024-Update
GRMZM2G462625 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 Orthogroups_2024-Update
Glyma.01G234100 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 Orthogroups_2024-Update
Glyma.02G201800 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Orthogroups_2024-Update
Glyma.05G079500 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Orthogroups_2024-Update
Glyma.11G213300 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.02 Orthogroups_2024-Update
MA_64083g0010 No alias (at1g11290 : 632.0) Pentatricopeptide Repeat Protein... 0.03 Orthogroups_2024-Update
MA_71104g0010 No alias (at3g12770 : 623.0) Encodes a pentatricopeptide repeat... 0.03 Orthogroups_2024-Update
PSME_00021863-RA No alias (at2g22070 : 612.0) pentatricopeptide (PPR)... 0.03 Orthogroups_2024-Update
Pp1s48_253V6 No alias hypothetical protein [Oryza sativa (japonica cultivar-group)] 0.02 Orthogroups_2024-Update
Sobic.001G016100.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Sobic.002G007000.2 No alias RNA editing factor *(ELI1) 0.04 Orthogroups_2024-Update
Sobic.002G292300.2 No alias Unknown function 0.03 Orthogroups_2024-Update
Sobic.004G246800.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Sobic.006G114300.1 No alias Unknown function 0.02 Orthogroups_2024-Update
Sobic.009G250700.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Sobic.010G153600.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Solyc01g010510 No alias Pentatricopeptide repeat (PPR) superfamily protein (AHRD... 0.02 Orthogroups_2024-Update
Solyc01g110010 No alias Pentatricopeptide repeat-containing protein (AHRD V3.3... 0.02 Orthogroups_2024-Update
Solyc11g065250 No alias Pentatricopeptide repeat superfamily protein (AHRD V3.3... 0.04 Orthogroups_2024-Update
Sopen02g018640 No alias PPR repeat family 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0008270 zinc ion binding IEA InterProScan predictions
Toggle parental
Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP Predicted GO
MF GO:0003684 damaged DNA binding IEP Predicted GO
MF GO:0003690 double-stranded DNA binding IEP Predicted GO
MF GO:0003906 DNA-(apurinic or apyrimidinic site) endonuclease activity IEP Predicted GO
MF GO:0004345 glucose-6-phosphate dehydrogenase activity IEP Predicted GO
MF GO:0004609 phosphatidylserine decarboxylase activity IEP Predicted GO
MF GO:0005509 calcium ion binding IEP Predicted GO
BP GO:0005996 monosaccharide metabolic process IEP Predicted GO
BP GO:0006006 glucose metabolic process IEP Predicted GO
BP GO:0006281 DNA repair IEP Predicted GO
BP GO:0006284 base-excision repair IEP Predicted GO
BP GO:0006289 nucleotide-excision repair IEP Predicted GO
BP GO:0006298 mismatch repair IEP Predicted GO
BP GO:0006629 lipid metabolic process IEP Predicted GO
BP GO:0006644 phospholipid metabolic process IEP Predicted GO
BP GO:0006950 response to stress IEP Predicted GO
BP GO:0006974 cellular response to DNA damage stimulus IEP Predicted GO
MF GO:0008081 phosphoric diester hydrolase activity IEP Predicted GO
BP GO:0008152 metabolic process IEP Predicted GO
BP GO:0008654 phospholipid biosynthetic process IEP Predicted GO
CC GO:0009523 photosystem II IEP Predicted GO
CC GO:0009654 photosystem II oxygen evolving complex IEP Predicted GO
MF GO:0016799 hydrolase activity, hydrolyzing N-glycosyl compounds IEP Predicted GO
MF GO:0016831 carboxy-lyase activity IEP Predicted GO
BP GO:0019318 hexose metabolic process IEP Predicted GO
CC GO:0019898 extrinsic component of membrane IEP Predicted GO
MF GO:0030983 mismatched DNA binding IEP Predicted GO
BP GO:0033554 cellular response to stress IEP Predicted GO
MF GO:0036094 small molecule binding IEP Predicted GO
MF GO:0050661 NADP binding IEP Predicted GO
BP GO:0051716 cellular response to stimulus IEP Predicted GO
MF GO:1901265 nucleoside phosphate binding IEP Predicted GO
CC GO:1990204 oxidoreductase complex IEP Predicted GO
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 322 371
IPR002885 Pentatricopeptide_repeat 515 562
IPR002885 Pentatricopeptide_repeat 217 264
IPR002885 Pentatricopeptide_repeat 117 147
IPR002885 Pentatricopeptide_repeat 590 614
IPR002885 Pentatricopeptide_repeat 398 422
IPR002885 Pentatricopeptide_repeat 86 112
IPR032867 DYW_dom 689 811
No external refs found!