LOC_Os05g17830

Description : retrotransposon protein, putative, unclassified, expressed

Gene families : OG_42_0000004 (Orthogroups_2024-Update) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Oryza release: LOC_Os05g17830
Cluster	HCCA clusters: cluster_0055

Target	Alias	Description	ECC score	Gene Family Method
Cre01.g006402	No alias	Function unknown	0.01	Orthogroups_2024-Update
LOC_Os09g28260	No alias	retrotransposon protein, putative, Ty3-gypsy subclass, expressed	0.03	Orthogroups_2024-Update
Sopen01g015430	No alias	Retroviral aspartyl protease	0.03	Orthogroups_2024-Update
Sopen06g008750	No alias	Retroviral aspartyl protease	0.02	Orthogroups_2024-Update
Sopen09g020310	No alias	Retroviral aspartyl protease	0.02	Orthogroups_2024-Update
Sopen10g007750	No alias	Reverse transcriptase (RNA-dependent DNA polymerase)	0.01	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	IEA	InterProScan predictions
MF	GO:0005488	binding	None	Extended
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006259	DNA metabolic process	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
MF	GO:0008270	zinc ion binding	IEA	InterProScan predictions
BP	GO:0009987	cellular process	None	Extended
BP	GO:0015074	DNA integration	IEA	InterProScan predictions
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043169	cation binding	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
MF	GO:0046872	metal ion binding	None	Extended
MF	GO:0046914	transition metal ion binding	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

Type	GO Term	Name	Evidence	Source
MF	GO:0031625	ubiquitin protein ligase binding	IEP	Predicted GO
MF	GO:0044389	ubiquitin-like protein ligase binding	IEP	Predicted GO

InterPro domains	Description	Start	Stop
IPR001878	Znf_CCHC	387	403
IPR000477	RT_dom	764	923
IPR001584	Integrase_cat-core	1265	1376
IPR005162	Retrotrans_gag_dom	180	277

External Links

No external refs found!