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  5. LOC_Os05g19570

LOC_Os05g19570


Description : expansin precursor, putative, expressed


Gene families : OG_42_0000014 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000014_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Oryza release: LOC_Os05g19570
Cluster HCCA clusters: cluster_0118

Target Alias Description ECC score Gene Family Method Actions
409954 No alias expansin A8 0.03 Orthogroups_2024-Update
419575 No alias expansin A16 0.03 Orthogroups_2024-Update
A4A49_13869 No alias expansin-a3 0.02 Orthogroups_2024-Update
At1g20190 No alias Expansin-A11 [Source:UniProtKB/Swiss-Prot;Acc:Q9LNU3] 0.02 Orthogroups_2024-Update
At5g05290 No alias Expansin-A2 [Source:UniProtKB/Swiss-Prot;Acc:Q38866] 0.02 Orthogroups_2024-Update
Bradi2g10320 No alias expansin A14 0.02 Orthogroups_2024-Update
Brara.F03107.1 No alias alpha-class expansin 0.03 Orthogroups_2024-Update
GRMZM2G073373 No alias expansin 11 0.02 Orthogroups_2024-Update
Pp1s196_30V6 No alias expansin 2 0.01 Orthogroups_2024-Update
Pp1s363_2V6 No alias expansin 2 0.02 Orthogroups_2024-Update
Seita.9G342900.1 No alias alpha-class expansin 0.02 Orthogroups_2024-Update
Sopen01g006710 No alias Pollen allergen 0.02 Orthogroups_2024-Update
Sopen02g032810 No alias Pollen allergen 0.02 Orthogroups_2024-Update
Sopen03g034340 No alias Pollen allergen 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0002682 regulation of immune system process IEP Predicted GO
BP GO:0002831 regulation of response to biotic stimulus IEP Predicted GO
MF GO:0003690 double-stranded DNA binding IEP Predicted GO
MF GO:0004650 polygalacturonase activity IEP Predicted GO
BP GO:0005975 carbohydrate metabolic process IEP Predicted GO
BP GO:0006298 mismatch repair IEP Predicted GO
BP GO:0010112 regulation of systemic acquired resistance IEP Predicted GO
MF GO:0010309 acireductone dioxygenase [iron(II)-requiring] activity IEP Predicted GO
BP GO:0030258 lipid modification IEP Predicted GO
BP GO:0030259 lipid glycosylation IEP Predicted GO
MF GO:0030983 mismatched DNA binding IEP Predicted GO
BP GO:0031347 regulation of defense response IEP Predicted GO
BP GO:0032101 regulation of response to external stimulus IEP Predicted GO
BP GO:0043900 regulation of multi-organism process IEP Predicted GO
BP GO:0045088 regulation of innate immune response IEP Predicted GO
BP GO:0048583 regulation of response to stimulus IEP Predicted GO
BP GO:0050776 regulation of immune response IEP Predicted GO
BP GO:0080134 regulation of response to stress IEP Predicted GO
InterPro domains Description Start Stop
IPR007117 Expansin_CBD 162 239
IPR009009 RlpA-like_DPBB 64 151
No external refs found!