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  5. LOC_Os05g23140

LOC_Os05g23140


Description : retrotransposon protein, putative, LINE subclass, expressed


Gene families : OG_42_0001692 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001692_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Oryza release: LOC_Os05g23140
Cluster HCCA clusters: cluster_0033

Target Alias Description ECC score Gene Family Method Actions
Bradi1g68440 No alias heat shock protein 21 0.02 Orthogroups_2024-Update
Glyma.08G212000 No alias HSP20-like chaperones superfamily protein 0.03 Orthogroups_2024-Update
Glyma.11G246600 No alias heat shock protein 21 0.03 Orthogroups_2024-Update
MA_10434235g0020 No alias no hits & (original description: no original description) 0.02 Orthogroups_2024-Update
MA_10436974g0010 No alias (at4g27670 : 116.0) chloroplast located small heat shock... 0.03 Orthogroups_2024-Update
PSME_00011437-RA No alias (at4g27670 : 139.0) chloroplast located small heat shock... 0.04 Orthogroups_2024-Update
PSME_00015517-RA No alias (at4g27670 : 216.0) chloroplast located small heat shock... 0.03 Orthogroups_2024-Update
PSME_00015518-RA No alias (p30222|hs22c_pethy : 195.0) Small heat shock protein,... 0.04 Orthogroups_2024-Update
PSME_00027243-RA No alias (p30222|hs22c_pethy : 206.0) Small heat shock protein,... 0.02 Orthogroups_2024-Update
PSME_00027244-RA No alias (p30222|hs22c_pethy : 189.0) Small heat shock protein,... 0.03 Orthogroups_2024-Update
Sobic.004G083600.1 No alias Unknown function 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003849 3-deoxy-7-phosphoheptulonate synthase activity IEP Predicted GO
MF GO:0004867 serine-type endopeptidase inhibitor activity IEP Predicted GO
MF GO:0008378 galactosyltransferase activity IEP Predicted GO
MF GO:0008519 ammonium transmembrane transporter activity IEP Predicted GO
BP GO:0009072 aromatic amino acid family metabolic process IEP Predicted GO
BP GO:0009073 aromatic amino acid family biosynthetic process IEP Predicted GO
BP GO:0009611 response to wounding IEP Predicted GO
BP GO:0015696 ammonium transport IEP Predicted GO
MF GO:0016307 phosphatidylinositol phosphate kinase activity IEP Predicted GO
MF GO:0016651 oxidoreductase activity, acting on NAD(P)H IEP Predicted GO
MF GO:0016757 transferase activity, transferring glycosyl groups IEP Predicted GO
MF GO:0016758 transferase activity, transferring hexosyl groups IEP Predicted GO
MF GO:0016765 transferase activity, transferring alkyl or aryl (other than methyl) groups IEP Predicted GO
BP GO:0046488 phosphatidylinositol metabolic process IEP Predicted GO
MF GO:0050664 oxidoreductase activity, acting on NAD(P)H, oxygen as acceptor IEP Predicted GO
InterPro domains Description Start Stop
IPR002068 A-crystallin/Hsp20_dom 143 250
No external refs found!