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  5. Solyc08g006660

Solyc08g006660


Description : LOW QUALITY:Conserved oligomeric Golgi complex subunit 2 (AHRD V3.3 *** A0A0B0MZ88_GOSAR)


Gene families : OG_42_0004946 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0004946_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Solanum release: Solyc08g006660
Cluster HCCA clusters: Cluster_160

Target Alias Description ECC score Gene Family Method Actions
Bradi1g01740 No alias Function unknown 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0000290 deadenylation-dependent decapping of nuclear-transcribed mRNA IEP Predicted GO
BP GO:0000956 nuclear-transcribed mRNA catabolic process IEP Predicted GO
MF GO:0004222 metalloendopeptidase activity IEP Predicted GO
CC GO:0005667 transcription factor complex IEP Predicted GO
CC GO:0005669 transcription factor TFIID complex IEP Predicted GO
CC GO:0005783 endoplasmic reticulum IEP Predicted GO
BP GO:0006066 alcohol metabolic process IEP Predicted GO
BP GO:0006352 DNA-templated transcription, initiation IEP Predicted GO
BP GO:0006401 RNA catabolic process IEP Predicted GO
BP GO:0006402 mRNA catabolic process IEP Predicted GO
BP GO:0006810 transport IEP Predicted GO
MF GO:0008047 enzyme activator activity IEP Predicted GO
MF GO:0008237 metallopeptidase activity IEP Predicted GO
BP GO:0009892 negative regulation of metabolic process IEP Predicted GO
BP GO:0010605 negative regulation of macromolecule metabolic process IEP Predicted GO
BP GO:0010629 negative regulation of gene expression IEP Predicted GO
MF GO:0015298 solute:cation antiporter activity IEP Predicted GO
MF GO:0015299 solute:proton antiporter activity IEP Predicted GO
BP GO:0016192 vesicle-mediated transport IEP Predicted GO
BP GO:0019751 polyol metabolic process IEP Predicted GO
CC GO:0030117 membrane coat IEP Predicted GO
CC GO:0030118 clathrin coat IEP Predicted GO
CC GO:0030120 vesicle coat IEP Predicted GO
CC GO:0030125 clathrin vesicle coat IEP Predicted GO
CC GO:0030130 clathrin coat of trans-Golgi network vesicle IEP Predicted GO
CC GO:0030132 clathrin coat of coated pit IEP Predicted GO
BP GO:0032957 inositol trisphosphate metabolic process IEP Predicted GO
BP GO:0043085 positive regulation of catalytic activity IEP Predicted GO
BP GO:0043647 inositol phosphate metabolic process IEP Predicted GO
BP GO:0044093 positive regulation of molecular function IEP Predicted GO
CC GO:0044422 organelle part IEP Predicted GO
CC GO:0044431 Golgi apparatus part IEP Predicted GO
CC GO:0044433 cytoplasmic vesicle part IEP Predicted GO
CC GO:0044446 intracellular organelle part IEP Predicted GO
CC GO:0044451 nucleoplasm part IEP Predicted GO
CC GO:0044459 plasma membrane part IEP Predicted GO
CC GO:0044798 nuclear transcription factor complex IEP Predicted GO
MF GO:0047325 inositol tetrakisphosphate 1-kinase activity IEP Predicted GO
BP GO:0048193 Golgi vesicle transport IEP Predicted GO
BP GO:0048519 negative regulation of biological process IEP Predicted GO
BP GO:0050790 regulation of catalytic activity IEP Predicted GO
BP GO:0051179 localization IEP Predicted GO
BP GO:0051234 establishment of localization IEP Predicted GO
MF GO:0051765 inositol tetrakisphosphate kinase activity IEP Predicted GO
MF GO:0051766 inositol trisphosphate kinase activity IEP Predicted GO
MF GO:0052725 inositol-1,3,4-trisphosphate 6-kinase activity IEP Predicted GO
MF GO:0052726 inositol-1,3,4-trisphosphate 5-kinase activity IEP Predicted GO
BP GO:0065009 regulation of molecular function IEP Predicted GO
CC GO:0090575 RNA polymerase II transcription factor complex IEP Predicted GO
CC GO:0098797 plasma membrane protein complex IEP Predicted GO
BP GO:1901615 organic hydroxy compound metabolic process IEP Predicted GO
InterPro domains Description Start Stop
IPR024602 COG_su2_N 37 168
IPR024603 COG_complex_COG2_C 576 704
No external refs found!