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  5. LOC_Os05g27940

LOC_Os05g27940


Description : 40S ribosomal protein S7, putative, expressed


Gene families : OG_42_0002228 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0002228_tree

Sequence : coding (download), protein (download)


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Type Description Actions
Neighborhood Oryza release: LOC_Os05g27940
Cluster HCCA clusters: cluster_0072

Target Alias Description ECC score Gene Family Method Actions
148446 No alias Ribosomal protein S7e family protein 0.03 Orthogroups_2024-Update
A4A49_59553 No alias 40s ribosomal protein s7-1 0.02 Orthogroups_2024-Update
Bradi1g65150 No alias Ribosomal protein S7e family protein 0.03 Orthogroups_2024-Update
Bradi3g23310 No alias Ribosomal protein S7e family protein 0.04 Orthogroups_2024-Update
Brara.C00708.1 No alias component *(eS7) of small ribosomal-subunit (SSU) proteome 0.02 Orthogroups_2024-Update
Brara.C02996.1 No alias component *(eS7) of small ribosomal-subunit (SSU) proteome 0.04 Orthogroups_2024-Update
Brara.J01899.1 No alias component *(eS7) of small ribosomal-subunit (SSU) proteome 0.03 Orthogroups_2024-Update
Cre12.g498900 No alias Ribosomal protein S7e family protein 0.03 Orthogroups_2024-Update
GRMZM2G030016 No alias Ribosomal protein S7e family protein 0.02 Orthogroups_2024-Update
Glyma.05G238000 No alias Ribosomal protein S7e family protein 0.04 Orthogroups_2024-Update
Glyma.07G092900 No alias Ribosomal protein S7e family protein 0.03 Orthogroups_2024-Update
Glyma.08G045100 No alias Ribosomal protein S7e family protein 0.03 Orthogroups_2024-Update
Glyma.09G183300 No alias Ribosomal protein S7e family protein 0.05 Orthogroups_2024-Update
Pp1s152_7V6 No alias 40s ribosomal protein expressed 0.03 Orthogroups_2024-Update
Pp1s49_260V6 No alias 40s ribosomal protein 0.02 Orthogroups_2024-Update
Seita.9G437500.1 No alias component *(eS7) of small ribosomal-subunit (SSU) proteome 0.03 Orthogroups_2024-Update
Sobic.001G403500.1 No alias component *(eS7) of small ribosomal-subunit (SSU) proteome 0.04 Orthogroups_2024-Update
Sobic.009G101700.2 No alias component *(eS7) of small ribosomal-subunit (SSU) proteome 0.03 Orthogroups_2024-Update
Solyc03g119360 No alias 40S ribosomal protein S7-like protein (AHRD V3.3 ***... 0.03 Orthogroups_2024-Update
Solyc06g069090 No alias 40S ribosomal protein S7-like protein (AHRD V3.3 ***... 0.03 Orthogroups_2024-Update
Sopen03g038230 No alias Ribosomal protein S7e 0.02 Orthogroups_2024-Update
Sopen06g026370 No alias Ribosomal protein S7e 0.04 Orthogroups_2024-Update
evm.model.contig_2068.1 No alias (at1g48830 : 206.0) Ribosomal protein S7e family... 0.04 Orthogroups_2024-Update
evm.model.tig00021682.9 No alias (q9xet4|rs7_secce : 233.0) 40S ribosomal protein S7 -... 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEA InterProScan predictions
CC GO:0005622 intracellular IEA InterProScan predictions
CC GO:0005840 ribosome IEA InterProScan predictions
BP GO:0006412 translation IEA InterProScan predictions
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Type GO Term Name Evidence Source
BP GO:0000160 phosphorelay signal transduction system IEP Predicted GO
MF GO:0004425 indole-3-glycerol-phosphate synthase activity IEP Predicted GO
MF GO:0004843 thiol-dependent ubiquitin-specific protease activity IEP Predicted GO
BP GO:0006334 nucleosome assembly IEP Predicted GO
BP GO:0007165 signal transduction IEP Predicted GO
MF GO:0008134 transcription factor binding IEP Predicted GO
MF GO:0017025 TBP-class protein binding IEP Predicted GO
BP GO:0034728 nucleosome organization IEP Predicted GO
BP GO:0035556 intracellular signal transduction IEP Predicted GO
BP GO:0065004 protein-DNA complex assembly IEP Predicted GO
BP GO:0071824 protein-DNA complex subunit organization IEP Predicted GO
InterPro domains Description Start Stop
IPR000554 Ribosomal_S7e 7 187
No external refs found!