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  5. LOC_Os05g28120

LOC_Os05g28120


Description : transposon protein, putative, unclassified, expressed


Gene families : OG_42_0000504 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000504_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Oryza release: LOC_Os05g28120
Cluster HCCA clusters: cluster_0132

Target Alias Description ECC score Gene Family Method Actions
Brara.D01167.1 No alias Unknown function 0.02 Orthogroups_2024-Update
Solyc05g015190 No alias No description available 0.03 Orthogroups_2024-Update
Solyc06g050680 No alias No description available 0.02 Orthogroups_2024-Update
Solyc07g042340 No alias No description available 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0008270 zinc ion binding IEA InterProScan predictions
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Type GO Term Name Evidence Source
MF GO:0004222 metalloendopeptidase activity IEP Predicted GO
MF GO:0004367 glycerol-3-phosphate dehydrogenase [NAD+] activity IEP Predicted GO
CC GO:0005643 nuclear pore IEP Predicted GO
BP GO:0006072 glycerol-3-phosphate metabolic process IEP Predicted GO
BP GO:0006913 nucleocytoplasmic transport IEP Predicted GO
MF GO:0017056 structural constituent of nuclear pore IEP Predicted GO
CC GO:0030117 membrane coat IEP Predicted GO
CC GO:0030120 vesicle coat IEP Predicted GO
CC GO:0030126 COPI vesicle coat IEP Predicted GO
CC GO:0044431 Golgi apparatus part IEP Predicted GO
CC GO:0044433 cytoplasmic vesicle part IEP Predicted GO
BP GO:0046168 glycerol-3-phosphate catabolic process IEP Predicted GO
BP GO:0046907 intracellular transport IEP Predicted GO
BP GO:0051169 nuclear transport IEP Predicted GO
BP GO:0051641 cellular localization IEP Predicted GO
BP GO:0051649 establishment of localization in cell IEP Predicted GO
BP GO:0052646 alditol phosphate metabolic process IEP Predicted GO
BP GO:1901136 carbohydrate derivative catabolic process IEP Predicted GO
InterPro domains Description Start Stop
IPR018289 MULE_transposase_dom 423 529
IPR015401 Transposase_MuDR_N 1 58
IPR004332 Transposase_MuDR 222 288
IPR010666 Znf_GRF 1451 1497
No external refs found!