LOC_Os05g29700

Description : retrotransposon, putative, centromere-specific, expressed

Gene families : OG_42_0000004 (Orthogroups_2024-Update) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Oryza release: LOC_Os05g29700
Cluster	HCCA clusters: cluster_0141

Target	Alias	Description	ECC score	Gene Family Method
Glyma.14G183700	No alias	Function unknown	0.02	Orthogroups_2024-Update
HORVU3Hr1G033880.2	No alias	Unknown function	0.04	Orthogroups_2024-Update
HORVU4Hr1G045110.1	No alias	Unknown function	0.02	Orthogroups_2024-Update
LOC_Os10g21350	No alias	retrotransposon protein, putative, unclassified, expressed	0.03	Orthogroups_2024-Update
Potri.019G017800	No alias	Function unknown	0.03	Orthogroups_2024-Update
Solyc10g047790	No alias	No description available	0.02	Orthogroups_2024-Update
Solyc11g028190	No alias	No description available	0.02	Orthogroups_2024-Update
Solyc11g039520	No alias	No description available	0.02	Orthogroups_2024-Update
Sopen00g005290	No alias	Reverse transcriptase (RNA-dependent DNA polymerase)	0.03	Orthogroups_2024-Update
Sopen03g021300	No alias	hypothetical protein	0.02	Orthogroups_2024-Update
Sopen08g006680	No alias	Integrase core domain	0.02	Orthogroups_2024-Update
Sopen12g011940	No alias	Integrase core domain	0.03	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006259	DNA metabolic process	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0015074	DNA integration	IEA	InterProScan predictions
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended

Type	GO Term	Name	Evidence	Source
MF	GO:0003677	DNA binding	IEP	Predicted GO
MF	GO:0004652	polynucleotide adenylyltransferase activity	IEP	Predicted GO
BP	GO:0043631	RNA polyadenylation	IEP	Predicted GO
MF	GO:0070566	adenylyltransferase activity	IEP	Predicted GO

InterPro domains	Description	Start	Stop
IPR001584	Integrase_cat-core	732	840

External Links

No external refs found!