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  5. LOC_Os05g30530

LOC_Os05g30530


Description : 40S ribosomal protein S4, putative, expressed


Gene families : OG_42_0001598 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001598_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Oryza release: LOC_Os05g30530
Cluster HCCA clusters: cluster_0082

Target Alias Description ECC score Gene Family Method Actions
Bradi2g35620 No alias Ribosomal protein S4 (RPS4A) family protein 0.03 Orthogroups_2024-Update
Brara.C00278.1 No alias component *(eS4) of small ribosomal-subunit (SSU) proteome 0.02 Orthogroups_2024-Update
Brara.C01137.1 No alias component *(eS4) of small ribosomal-subunit (SSU) proteome 0.04 Orthogroups_2024-Update
GRMZM2G125271 No alias Ribosomal protein S4 (RPS4A) family protein 0.02 Orthogroups_2024-Update
Glyma.02G263200 No alias Ribosomal protein S4 (RPS4A) family protein 0.03 Orthogroups_2024-Update
Glyma.14G056900 No alias Ribosomal protein S4 (RPS4A) family protein 0.03 Orthogroups_2024-Update
Pp1s38_194V6 No alias 40s ribosomal s4 protein 0.02 Orthogroups_2024-Update
Sobic.009G115700.1 No alias component *(eS4) of small ribosomal-subunit (SSU) proteome 0.03 Orthogroups_2024-Update
Solyc06g007360 No alias 40S ribosomal protein S4 (AHRD V3.3 *** RS4_SOLTU) 0.02 Orthogroups_2024-Update
Sopen02g019410 No alias Ribosomal family S4e 0.03 Orthogroups_2024-Update
Sopen02g019440 No alias Ribosomal family S4e 0.04 Orthogroups_2024-Update
Sopen02g019450 No alias Ribosomal family S4e 0.02 Orthogroups_2024-Update
evm.model.contig_832.1 No alias (p46299|rs4_goshi : 352.0) 40S ribosomal protein S4 -... 0.01 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA InterProScan predictions
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Type GO Term Name Evidence Source
MF GO:0000774 adenyl-nucleotide exchange factor activity IEP Predicted GO
MF GO:0003743 translation initiation factor activity IEP Predicted GO
MF GO:0004329 formate-tetrahydrofolate ligase activity IEP Predicted GO
MF GO:0004619 phosphoglycerate mutase activity IEP Predicted GO
MF GO:0004721 phosphoprotein phosphatase activity IEP Predicted GO
MF GO:0005049 nuclear export signal receptor activity IEP Predicted GO
CC GO:0005575 cellular_component IEP Predicted GO
CC GO:0005737 cytoplasm IEP Predicted GO
CC GO:0005852 eukaryotic translation initiation factor 3 complex IEP Predicted GO
BP GO:0005996 monosaccharide metabolic process IEP Predicted GO
BP GO:0006006 glucose metabolic process IEP Predicted GO
BP GO:0006007 glucose catabolic process IEP Predicted GO
BP GO:0006413 translational initiation IEP Predicted GO
BP GO:0006605 protein targeting IEP Predicted GO
BP GO:0006612 protein targeting to membrane IEP Predicted GO
BP GO:0006613 cotranslational protein targeting to membrane IEP Predicted GO
BP GO:0006614 SRP-dependent cotranslational protein targeting to membrane IEP Predicted GO
BP GO:0006897 endocytosis IEP Predicted GO
MF GO:0008135 translation factor activity, RNA binding IEP Predicted GO
MF GO:0008138 protein tyrosine/serine/threonine phosphatase activity IEP Predicted GO
MF GO:0008236 serine-type peptidase activity IEP Predicted GO
MF GO:0008312 7S RNA binding IEP Predicted GO
BP GO:0009116 nucleoside metabolic process IEP Predicted GO
CC GO:0009654 photosystem II oxygen evolving complex IEP Predicted GO
BP GO:0016311 dephosphorylation IEP Predicted GO
MF GO:0016853 isomerase activity IEP Predicted GO
MF GO:0016866 intramolecular transferase activity IEP Predicted GO
MF GO:0016868 intramolecular transferase activity, phosphotransferases IEP Predicted GO
MF GO:0016874 ligase activity IEP Predicted GO
MF GO:0017171 serine hydrolase activity IEP Predicted GO
BP GO:0019318 hexose metabolic process IEP Predicted GO
BP GO:0019320 hexose catabolic process IEP Predicted GO
CC GO:0019898 extrinsic component of membrane IEP Predicted GO
MF GO:0030145 manganese ion binding IEP Predicted GO
BP GO:0033365 protein localization to organelle IEP Predicted GO
BP GO:0034613 cellular protein localization IEP Predicted GO
MF GO:0042802 identical protein binding IEP Predicted GO
MF GO:0042803 protein homodimerization activity IEP Predicted GO
BP GO:0044281 small molecule metabolic process IEP Predicted GO
BP GO:0044282 small molecule catabolic process IEP Predicted GO
CC GO:0044424 intracellular part IEP Predicted GO
BP GO:0045047 protein targeting to ER IEP Predicted GO
BP GO:0046365 monosaccharide catabolic process IEP Predicted GO
CC GO:0048500 signal recognition particle IEP Predicted GO
MF GO:0050664 oxidoreductase activity, acting on NAD(P)H, oxygen as acceptor IEP Predicted GO
MF GO:0051087 chaperone binding IEP Predicted GO
MF GO:0060590 ATPase regulator activity IEP Predicted GO
BP GO:0070727 cellular macromolecule localization IEP Predicted GO
BP GO:0070972 protein localization to endoplasmic reticulum IEP Predicted GO
BP GO:0072594 establishment of protein localization to organelle IEP Predicted GO
BP GO:0072599 establishment of protein localization to endoplasmic reticulum IEP Predicted GO
BP GO:0072657 protein localization to membrane IEP Predicted GO
BP GO:0090150 establishment of protein localization to membrane IEP Predicted GO
BP GO:0098657 import into cell IEP Predicted GO
MF GO:0140104 molecular carrier activity IEP Predicted GO
MF GO:0140142 nucleocytoplasmic carrier activity IEP Predicted GO
BP GO:1901657 glycosyl compound metabolic process IEP Predicted GO
InterPro domains Description Start Stop
IPR005824 KOW 177 211
IPR032277 40S_S4_C 212 258
IPR013845 Ribosomal_S4e_central_region 95 169
IPR002942 S4_RNA-bd 47 90
IPR013843 Ribosomal_S4e_N 3 39
No external refs found!