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  5. Solyc08g007220

Solyc08g007220


Description : Nuclear RNA binding protein-like (AHRD V3.3 *** Q38M48_SOLTU)


Gene families : OG_42_0001353 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001353_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Solanum release: Solyc08g007220
Cluster HCCA clusters: Cluster_102

Target Alias Description ECC score Gene Family Method Actions
At5g47210 No alias RGG repeats nuclear RNA binding protein C... 0.04 Orthogroups_2024-Update
Bradi2g18860 No alias Hyaluronan / mRNA binding family 0.14 Orthogroups_2024-Update
Bradi2g48500 No alias Hyaluronan / mRNA binding family 0.26 Orthogroups_2024-Update
Brara.A00883.1 No alias regulatory protein *(RGG) of mRNA quality control 0.08 Orthogroups_2024-Update
Brara.B02951.1 No alias regulatory protein *(RGG) of mRNA quality control 0.12 Orthogroups_2024-Update
Brara.C04556.1 No alias regulatory protein *(RGG) of mRNA quality control 0.19 Orthogroups_2024-Update
Brara.H00932.1 No alias regulatory protein *(RGG) of mRNA quality control 0.09 Orthogroups_2024-Update
Brara.I01982.1 No alias regulatory protein *(RGG) of mRNA quality control 0.23 Orthogroups_2024-Update
GRMZM2G116282 No alias Hyaluronan / mRNA binding family 0.16 Orthogroups_2024-Update
Glyma.03G110300 No alias Hyaluronan / mRNA binding family 0.05 Orthogroups_2024-Update
Glyma.07G114600 No alias Hyaluronan / mRNA binding family 0.04 Orthogroups_2024-Update
Glyma.09G243200 No alias Hyaluronan / mRNA binding family 0.04 Orthogroups_2024-Update
Glyma.18G251400 No alias Hyaluronan / mRNA binding family 0.04 Orthogroups_2024-Update
LOC_Os01g41880 No alias hyaluronan/mRNA binding family domain containing... 0.03 Orthogroups_2024-Update
MA_9567870g0010 No alias (at4g17520 : 147.0) Hyaluronan / mRNA binding family;... 0.03 Orthogroups_2024-Update
Potri.001G153000 No alias Hyaluronan / mRNA binding family 0.08 Orthogroups_2024-Update
Potri.003G081600 No alias Hyaluronan / mRNA binding family 0.04 Orthogroups_2024-Update
Pp1s456_22V6 No alias contains ESTs AU070561(S3985),D23584(C3044) [Oryza... 0.04 Orthogroups_2024-Update
Seita.3G124100.1 No alias regulatory protein *(RGG) of mRNA quality control 0.07 Orthogroups_2024-Update
Seita.5G216700.1 No alias regulatory protein *(RGG) of mRNA quality control 0.07 Orthogroups_2024-Update
Seita.5G301000.1 No alias regulatory protein *(RGG) of mRNA quality control 0.03 Orthogroups_2024-Update
Sobic.003G211100.1 No alias regulatory protein *(RGG) of mRNA quality control 0.11 Orthogroups_2024-Update
Sobic.003G279800.1 No alias regulatory protein *(RGG) of mRNA quality control 0.08 Orthogroups_2024-Update
Sopen08g003170 No alias Hyaluronan / mRNA binding family 0.1 Orthogroups_2024-Update
Sopen08g003180 No alias Hyaluronan / mRNA binding family 0.21 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003674 molecular_function IEP Predicted GO
MF GO:0003676 nucleic acid binding IEP Predicted GO
MF GO:0003723 RNA binding IEP Predicted GO
MF GO:0003735 structural constituent of ribosome IEP Predicted GO
MF GO:0005198 structural molecule activity IEP Predicted GO
CC GO:0005575 cellular_component IEP Predicted GO
CC GO:0005622 intracellular IEP Predicted GO
CC GO:0005840 ribosome IEP Predicted GO
CC GO:0005852 eukaryotic translation initiation factor 3 complex IEP Predicted GO
BP GO:0006412 translation IEP Predicted GO
BP GO:0006518 peptide metabolic process IEP Predicted GO
BP GO:0006807 nitrogen compound metabolic process IEP Predicted GO
MF GO:0008097 5S rRNA binding IEP Predicted GO
MF GO:0008135 translation factor activity, RNA binding IEP Predicted GO
BP GO:0008150 biological_process IEP Predicted GO
BP GO:0008152 metabolic process IEP Predicted GO
BP GO:0009058 biosynthetic process IEP Predicted GO
BP GO:0009059 macromolecule biosynthetic process IEP Predicted GO
BP GO:0009987 cellular process IEP Predicted GO
CC GO:0015934 large ribosomal subunit IEP Predicted GO
BP GO:0019538 protein metabolic process IEP Predicted GO
MF GO:0019843 rRNA binding IEP Predicted GO
CC GO:0032991 protein-containing complex IEP Predicted GO
BP GO:0034641 cellular nitrogen compound metabolic process IEP Predicted GO
BP GO:0034645 cellular macromolecule biosynthetic process IEP Predicted GO
BP GO:0043043 peptide biosynthetic process IEP Predicted GO
BP GO:0043170 macromolecule metabolic process IEP Predicted GO
CC GO:0043226 organelle IEP Predicted GO
CC GO:0043228 non-membrane-bounded organelle IEP Predicted GO
CC GO:0043229 intracellular organelle IEP Predicted GO
CC GO:0043232 intracellular non-membrane-bounded organelle IEP Predicted GO
BP GO:0043603 cellular amide metabolic process IEP Predicted GO
BP GO:0043604 amide biosynthetic process IEP Predicted GO
BP GO:0044237 cellular metabolic process IEP Predicted GO
BP GO:0044238 primary metabolic process IEP Predicted GO
BP GO:0044249 cellular biosynthetic process IEP Predicted GO
BP GO:0044260 cellular macromolecule metabolic process IEP Predicted GO
BP GO:0044267 cellular protein metabolic process IEP Predicted GO
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP Predicted GO
CC GO:0044391 ribosomal subunit IEP Predicted GO
CC GO:0044424 intracellular part IEP Predicted GO
CC GO:0044444 cytoplasmic part IEP Predicted GO
CC GO:0044464 cell part IEP Predicted GO
BP GO:0071704 organic substance metabolic process IEP Predicted GO
BP GO:1901564 organonitrogen compound metabolic process IEP Predicted GO
BP GO:1901566 organonitrogen compound biosynthetic process IEP Predicted GO
BP GO:1901576 organic substance biosynthetic process IEP Predicted GO
CC GO:1990904 ribonucleoprotein complex IEP Predicted GO
InterPro domains Description Start Stop
IPR006861 HABP4_PAIRBP1-bd 96 204
No external refs found!