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  5. Solyc08g007520

Solyc08g007520


Description : Exosome complex component (AHRD V3.3 *** W9RYG2_9ROSA)


Gene families : OG_42_0005510 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0005510_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Solanum release: Solyc08g007520
Cluster HCCA clusters: Cluster_113

Target Alias Description ECC score Gene Family Method Actions
Sopen08g003480 No alias 3' exoribonuclease family, domain 1 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0001510 RNA methylation IEP Predicted GO
MF GO:0003723 RNA binding IEP Predicted GO
MF GO:0003746 translation elongation factor activity IEP Predicted GO
MF GO:0004003 ATP-dependent DNA helicase activity IEP Predicted GO
MF GO:0004222 metalloendopeptidase activity IEP Predicted GO
MF GO:0004665 prephenate dehydrogenase (NADP+) activity IEP Predicted GO
MF GO:0004826 phenylalanine-tRNA ligase activity IEP Predicted GO
MF GO:0005516 calmodulin binding IEP Predicted GO
MF GO:0005524 ATP binding IEP Predicted GO
BP GO:0006414 translational elongation IEP Predicted GO
BP GO:0006432 phenylalanyl-tRNA aminoacylation IEP Predicted GO
BP GO:0006520 cellular amino acid metabolic process IEP Predicted GO
BP GO:0006570 tyrosine metabolic process IEP Predicted GO
BP GO:0006571 tyrosine biosynthetic process IEP Predicted GO
BP GO:0006725 cellular aromatic compound metabolic process IEP Predicted GO
MF GO:0008026 ATP-dependent helicase activity IEP Predicted GO
MF GO:0008094 DNA-dependent ATPase activity IEP Predicted GO
MF GO:0008135 translation factor activity, RNA binding IEP Predicted GO
MF GO:0008237 metallopeptidase activity IEP Predicted GO
MF GO:0008977 prephenate dehydrogenase (NAD+) activity IEP Predicted GO
BP GO:0009072 aromatic amino acid family metabolic process IEP Predicted GO
BP GO:0009073 aromatic amino acid family biosynthetic process IEP Predicted GO
BP GO:0009095 aromatic amino acid family biosynthetic process, prephenate pathway IEP Predicted GO
BP GO:0009451 RNA modification IEP Predicted GO
BP GO:0016556 mRNA modification IEP Predicted GO
MF GO:0016627 oxidoreductase activity, acting on the CH-CH group of donors IEP Predicted GO
MF GO:0016628 oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor IEP Predicted GO
MF GO:0030976 thiamine pyrophosphate binding IEP Predicted GO
BP GO:0032259 methylation IEP Predicted GO
MF GO:0036094 small molecule binding IEP Predicted GO
BP GO:0043414 macromolecule methylation IEP Predicted GO
MF GO:0070035 purine NTP-dependent helicase activity IEP Predicted GO
BP GO:0080009 mRNA methylation IEP Predicted GO
BP GO:1901360 organic cyclic compound metabolic process IEP Predicted GO
BP GO:1901607 alpha-amino acid biosynthetic process IEP Predicted GO
MF GO:1901681 sulfur compound binding IEP Predicted GO
InterPro domains Description Start Stop
IPR015847 ExoRNase_PH_dom2 200 263
IPR001247 ExoRNase_PH_dom1 30 169
No external refs found!