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  5. LOC_Os05g41390

LOC_Os05g41390


Description : cyclin, putative, expressed


Gene families : OG_42_0000120 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000120_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Oryza release: LOC_Os05g41390
Cluster HCCA clusters: cluster_0100

Target Alias Description ECC score Gene Family Method Actions
A4A49_43169 No alias cyclin-a3-2 0.03 Orthogroups_2024-Update
Brara.B02504.1 No alias regulatory protein *(CYCA) of cell cycle 0.03 Orthogroups_2024-Update
Brara.G02190.1 No alias regulatory protein *(CYCB) of cell cycle 0.02 Orthogroups_2024-Update
HORVU4Hr1G013320.1 No alias regulatory protein *(CYCA) of cell cycle 0.03 Orthogroups_2024-Update
LOC_Os12g31810 No alias cyclin, putative, expressed 0.03 Orthogroups_2024-Update
MA_117574g0020 No alias (at3g11520 : 245.0) Encodes a B-type mitotic cyclin.;... 0.03 Orthogroups_2024-Update
PSME_00045973-RA No alias (p30278|ccnb2_medsa : 251.0) G2/mitotic-specific... 0.03 Orthogroups_2024-Update
Potri.009G066600 No alias Cyclin B1;4 0.03 Orthogroups_2024-Update
Seita.3G194700.1 No alias regulatory protein *(CYCB) of cell cycle 0.03 Orthogroups_2024-Update
Seita.5G352700.1 No alias regulatory protein *(CYCB) of cell cycle 0.02 Orthogroups_2024-Update
Sopen02g012760 No alias Cyclin, C-terminal domain 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
CC GO:0005634 nucleus IEA InterProScan predictions
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Type GO Term Name Evidence Source
MF GO:0004650 polygalacturonase activity IEP Predicted GO
MF GO:0005515 protein binding IEP Predicted GO
BP GO:0006720 isoprenoid metabolic process IEP Predicted GO
BP GO:0007010 cytoskeleton organization IEP Predicted GO
BP GO:0008299 isoprenoid biosynthetic process IEP Predicted GO
InterPro domains Description Start Stop
IPR006671 Cyclin_N 201 325
IPR004367 Cyclin_C-dom 328 443
No external refs found!