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  5. LOC_Os05g43850

LOC_Os05g43850


Description : OsFBT9 - F-box and tubby domain containing protein, expressed


Gene families : OG_42_0000271 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000271_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Oryza release: LOC_Os05g43850
Cluster HCCA clusters: cluster_0051

Target Alias Description ECC score Gene Family Method Actions
Bradi2g46350 No alias tubby like protein 7 0.02 Orthogroups_2024-Update
Brara.E01498.1 No alias TUB-type transcription factor 0.03 Orthogroups_2024-Update
Brara.G00196.1 No alias TUB-type transcription factor 0.03 Orthogroups_2024-Update
Cre12.g520650 No alias tubby like protein 1 0.01 Orthogroups_2024-Update
GRMZM2G068586 No alias tubby like protein 7 0.04 Orthogroups_2024-Update
GRMZM2G163726 No alias tubby like protein 10 0.03 Orthogroups_2024-Update
Glyma.01G173700 No alias tubby like protein 2 0.02 Orthogroups_2024-Update
Glyma.13G269600 No alias tubby like protein 7 0.03 Orthogroups_2024-Update
Glyma.17G022700 No alias tubby like protein 3 0.03 Orthogroups_2024-Update
Potri.005G228500 No alias tubby like protein 6 0.03 Orthogroups_2024-Update
Potri.008G195200 No alias tubby like protein 3 0.02 Orthogroups_2024-Update
Seita.7G293600.1 No alias TUB-type transcription factor 0.03 Orthogroups_2024-Update
Seita.8G043600.1 No alias TUB-type transcription factor 0.03 Orthogroups_2024-Update
Seita.9G404200.1 No alias TUB-type transcription factor 0.02 Orthogroups_2024-Update
Sobic.006G277200.1 No alias TUB-type transcription factor 0.02 Orthogroups_2024-Update
Sopen01g029620 No alias Tub family 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA InterProScan predictions
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Type GO Term Name Evidence Source
BP GO:0000184 nuclear-transcribed mRNA catabolic process, nonsense-mediated decay IEP Predicted GO
BP GO:0000956 nuclear-transcribed mRNA catabolic process IEP Predicted GO
BP GO:0006401 RNA catabolic process IEP Predicted GO
BP GO:0006402 mRNA catabolic process IEP Predicted GO
BP GO:0006486 protein glycosylation IEP Predicted GO
BP GO:0008104 protein localization IEP Predicted GO
MF GO:0008289 lipid binding IEP Predicted GO
BP GO:0009057 macromolecule catabolic process IEP Predicted GO
BP GO:0015031 protein transport IEP Predicted GO
BP GO:0015833 peptide transport IEP Predicted GO
BP GO:0016192 vesicle-mediated transport IEP Predicted GO
BP GO:0016197 endosomal transport IEP Predicted GO
BP GO:0016482 cytosolic transport IEP Predicted GO
CC GO:0030119 AP-type membrane coat adaptor complex IEP Predicted GO
CC GO:0030131 clathrin adaptor complex IEP Predicted GO
CC GO:0030906 retromer, cargo-selective complex IEP Predicted GO
MF GO:0031072 heat shock protein binding IEP Predicted GO
MF GO:0031625 ubiquitin protein ligase binding IEP Predicted GO
BP GO:0033036 macromolecule localization IEP Predicted GO
MF GO:0035091 phosphatidylinositol binding IEP Predicted GO
BP GO:0042147 retrograde transport, endosome to Golgi IEP Predicted GO
BP GO:0042886 amide transport IEP Predicted GO
BP GO:0043413 macromolecule glycosylation IEP Predicted GO
BP GO:0044265 cellular macromolecule catabolic process IEP Predicted GO
MF GO:0044389 ubiquitin-like protein ligase binding IEP Predicted GO
BP GO:0045184 establishment of protein localization IEP Predicted GO
BP GO:0046907 intracellular transport IEP Predicted GO
MF GO:0046912 transferase activity, transferring acyl groups, acyl groups converted into alkyl on transfer IEP Predicted GO
BP GO:0051641 cellular localization IEP Predicted GO
BP GO:0051649 establishment of localization in cell IEP Predicted GO
BP GO:0070085 glycosylation IEP Predicted GO
InterPro domains Description Start Stop
IPR000007 Tubby_C 115 367
IPR001810 F-box_dom 52 97
No external refs found!