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LOC_Os05g48150


Description : transposon protein, putative, unclassified, expressed


Gene families : OG_42_0000353 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000353_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Oryza release: LOC_Os05g48150
Cluster HCCA clusters: cluster_0058

Target Alias Description ECC score Gene Family Method Actions
Seita.2G292900.1 No alias regulatory component B1 of PP2A phosphatase complexes 0.03 Orthogroups_2024-Update
Solyc05g014340 No alias Serine/threonine protein phosphatase 2A regulatory... 0.03 Orthogroups_2024-Update

Seita.5G239000.1 details <td class="col-xs-1">CC</td> <td class="col-xs-2"><a href="/go/view/6403" data-toggle="tooltip" data-placement="top" title=""A complex, normally consisting of a catalytic and a regulatory subunit, which catalyzes the removal of a phosphate group from a serine or threonine residue of a protein." [GOC:bf]">GO:0008287</a></td> <td class="col-xs-6">protein serine/threonine phosphatase complex</td> <td class="col-xs-1">None</td> <td class="col-xs-2">Extended</td> </tr> <tr class="parent_term" style="display: none" style="clear:both;"> <td class="col-xs-1">BP</td> <td class="col-xs-2"><a href="/go/view/7968" data-toggle="tooltip" data-placement="top" title=""Any process that is carried out at the cellular level, but not necessarily restricted to a single cell. For example, cell communication occurs among more than one cell, but occurs at the cellular level." [GOC:go_curators, GOC:isa_complete]">GO:0009987</a></td> <td class="col-xs-6">cellular process</td> <td class="col-xs-1">None</td> <td class="col-xs-2">Extended</td> </tr> <tr class="parent_term" style="display: none" style="clear:both;"> <td class="col-xs-1">MF</td> <td class="col-xs-2"><a href="/go/view/12162" data-toggle="tooltip" data-placement="top" title=""Modulates the activity of a phosphatase, an enzyme which catalyzes of the removal of a phosphate group from a substrate molecule." [GOC:ai]">GO:0019208</a></td> <td class="col-xs-6">phosphatase regulator activity</td> <td class="col-xs-1">None</td> <td class="col-xs-2">Extended</td> </tr> <tr style="clear:both;"> <td class="col-xs-1">MF</td> <td class="col-xs-2"><a href="/go/view/12800" data-toggle="tooltip" data-placement="top" title=""Modulates the activity of a protein phosphatase, an enzyme which catalyzes of the removal of a phosphate group from a protein substrate molecule." [GOC:ai]">GO:0019888</a></td> <td class="col-xs-6">protein phosphatase regulator activity</td> <td class="col-xs-1">IEA</td> <td class="col-xs-2">InterProScan predictions</td> </tr> <tr class="parent_term" style="display: none" style="clear:both;"> <td class="col-xs-1">MF</td> <td class="col-xs-2"><a href="/go/view/13836" data-toggle="tooltip" data-placement="top" title=""Binds to and modulates the activity of an enzyme." [GOC:dph, GOC:mah, GOC:tb]">GO:0030234</a></td> <td class="col-xs-6">enzyme regulator activity</td> <td class="col-xs-1">None</td> <td class="col-xs-2">Extended</td> </tr> <tr class="parent_term" style="display: none" style="clear:both;"> <td class="col-xs-1">CC</td> <td class="col-xs-2"><a href="/go/view/16424" data-toggle="tooltip" data-placement="top" title=""A stable assembly of two or more macromolecules, i.e. proteins, nucleic acids, carbohydrates or lipids, in which at least one component is a protein and the constituent parts function together." [GOC:dos, GOC:mah]">GO:0032991</a></td> <td class="col-xs-6">protein-containing complex</td> <td class="col-xs-1">None</td> <td class="col-xs-2">Extended</td> </tr> <tr class="parent_term" style="display: none" style="clear:both;"> <td class="col-xs-1">CC</td> <td class="col-xs-2"><a href="/go/view/22586" data-toggle="tooltip" data-placement="top" title=""Any constituent part of the living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm." [GOC:jl]">GO:0044424</a></td> <td class="col-xs-6">intracellular part</td> <td class="col-xs-1">None</td> <td class="col-xs-2">Extended</td> </tr> <tr class="parent_term" style="display: none" style="clear:both;"> <td class="col-xs-1">CC</td> <td class="col-xs-2"><a href="/go/view/22625" data-toggle="tooltip" data-placement="top" title=""Any constituent part of a cell, the basic structural and functional unit of all organisms." [GOC:jl]">GO:0044464</a></td> <td class="col-xs-6">cell part</td> <td class="col-xs-1">None</td> <td class="col-xs-2">Extended</td> </tr> <tr class="parent_term" style="display: none" style="clear:both;"> <td class="col-xs-1">BP</td> <td class="col-xs-2"><a href="/go/view/27509" data-toggle="tooltip" data-placement="top" title=""Any process that modulates the frequency, rate or extent of a biological process. Biological processes are regulated by many means; examples include the control of gene expression, protein modification or interaction with a protein or substrate molecule." [GOC:ai, GOC:go_curators]">GO:0050789</a></td> <td class="col-xs-6">regulation of biological process</td> <td class="col-xs-1">None</td> <td class="col-xs-2">Extended</td> </tr> <tr class="parent_term" style="display: none" style="clear:both;"> <td class="col-xs-1">BP</td> <td class="col-xs-2"><a href="/go/view/27513" data-toggle="tooltip" data-placement="top" title=""Any process that modulates the frequency, rate or extent of a cellular process, any of those that are carried out at the cellular level, but are not necessarily restricted to a single cell. For example, cell communication occurs among more than one cell, but occurs at the cellular level." [GOC:go_curators]">GO:0050794</a></td> <td class="col-xs-6">regulation of cellular process</td> <td class="col-xs-1">None</td> <td class="col-xs-2">Extended</td> </tr> <tr class="parent_term" style="display: none" style="clear:both;"> <td class="col-xs-1">BP</td> <td class="col-xs-2"><a href="/go/view/31734" data-toggle="tooltip" data-placement="top" title=""Any process that modulates a measurable attribute of any biological process, quality or function." [GOC:dph, GOC:isa_complete, GOC:mah, GOC:pr, GOC:vw]">GO:0065007</a></td> <td class="col-xs-6">biological regulation</td> <td class="col-xs-1">None</td> <td class="col-xs-2">Extended</td> </tr> <tr class="parent_term" style="display: none" style="clear:both;"> <td class="col-xs-1">MF</td> <td class="col-xs-2"><a href="/go/view/36902" data-toggle="tooltip" data-placement="top" title=""A molecular function that modulates the activity of a gene product or complex. Examples include enzyme regulators and channel regulators." [GOC:dos, GOC:pt]">GO:0098772</a></td> <td class="col-xs-6">molecular function regulator</td> <td class="col-xs-1">None</td> <td class="col-xs-2">Extended</td> </tr> <tr class="parent_term" style="display: none" style="clear:both;"> <td class="col-xs-1">CC</td> <td class="col-xs-2"><a href="/go/view/41713" data-toggle="tooltip" data-placement="top" title=""A protein complex which is capable of catalytic activity." [GOC:bhm, GOC:TermGenie, PMID:8077207]">GO:1902494</a></td> <td class="col-xs-6">catalytic complex</td> <td class="col-xs-1">None</td> <td class="col-xs-2">Extended</td> </tr> <tr class="parent_term" style="display: none" style="clear:both;"> <td class="col-xs-1">CC</td> <td class="col-xs-2"><a href="/go/view/42476" data-toggle="tooltip" data-placement="top" title=""A protein complex which is capable of phosphatase activity." [GO_REF:0000088, GOC:bhm, GOC:TermGenie, PMID:24766807]">GO:1903293</a></td> <td class="col-xs-6">phosphatase complex</td> <td class="col-xs-1">None</td> <td class="col-xs-2">Extended</td> </tr> </tbody> </table> </div> <div class="panel-body"> <a href="#" id="go_toggle">Toggle parental</a> </div> </div> <div class="tab-pane fade" id="tab2default"> <div class="table-responsive"> <table class="table table-striped table-fixed" id="predicted_go_table"> <thead> <tr> <th class="col-xs-1" data-sort="string-ins"><span class="sort-icon"></span>Type</th> <th class="col-xs-2" data-sort="string-ins"><span class="sort-icon"></span><abbr title="Click to show help" href="/help/go" data-target="#helpModal">GO</abbr> Term</th> <th class="col-xs-6" data-sort="string-ins"><span class="sort-icon"></span>Name</th> <th class="col-xs-1" data-sort="string-ins"><span class="sort-icon"></span>Evidence</th> <th class="col-xs-2" data-sort="string-ins"><span class="sort-icon"></span>Source</th> </tr> </thead> <tbody> <tr style="clear:both;"> <td class="col-xs-1">MF</td> <td class="col-xs-2"><a href="/go/view/3372" data-toggle="tooltip" data-placement="top" title=""Catalysis of the reaction: (R)-mevalonate + CoA + 2 NADP(+) = (S)-3-hydroxy-3-methylglutaryl-CoA + 2 H(+) + 2 NADPH." [EC:1.1.1.34, RHEA:15989]">GO:0004420</a></td> <td class="col-xs-6">hydroxymethylglutaryl-CoA reductase (NADPH) activity</td> <td class="col-xs-1">IEP</td> <td class="col-xs-2">Predicted GO</td> </tr> <tr style="clear:both;"> <td class="col-xs-1">MF</td> <td class="col-xs-2"><a href="/go/view/3577" data-toggle="tooltip" data-placement="top" title=""Catalysis of the template-independent extension of the 3'- end of an RNA or DNA strand by addition of one adenosine molecule at a time. Cannot initiate a chain 'de novo'. The primer, depending on the source of the enzyme, may be an RNA or DNA fragment, or oligo(A) bearing a 3'-OH terminal group." [EC:2.7.7.19]">GO:0004652</a></td> <td class="col-xs-6">polynucleotide adenylyltransferase activity</td> <td class="col-xs-1">IEP</td> <td class="col-xs-2">Predicted GO</td> </tr> <tr style="clear:both;"> <td class="col-xs-1">MF</td> <td class="col-xs-2"><a href="/go/view/3595" data-toggle="tooltip" data-placement="top" title=""Catalysis of the phosphorylation of an amino acid residue in a protein, usually according to the reaction: a protein + ATP = a phosphoprotein + ADP." [MetaCyc:PROTEIN-KINASE-RXN]">GO:0004672</a></td> <td class="col-xs-6">protein kinase activity</td> <td class="col-xs-1">IEP</td> <td class="col-xs-2">Predicted GO</td> </tr> <tr style="clear:both;"> <td class="col-xs-1">BP</td> <td class="col-xs-2"><a href="/go/view/5092" data-toggle="tooltip" data-placement="top" title=""The process of introducing a phosphate group on to a protein." [GOC:hb]">GO:0006468</a></td> <td class="col-xs-6">protein phosphorylation</td> <td class="col-xs-1">IEP</td> <td class="col-xs-2">Predicted GO</td> </tr> <tr style="clear:both;"> <td class="col-xs-1">BP</td> <td class="col-xs-2"><a href="/go/view/5395" data-toggle="tooltip" data-placement="top" title=""The chemical reactions and pathways involving the nonmetallic element phosphorus or compounds that contain phosphorus, usually in the form of a phosphate group (PO4)." [GOC:ai]">GO:0006793</a></td> <td class="col-xs-6">phosphorus metabolic process</td> <td class="col-xs-1">IEP</td> <td class="col-xs-2">Predicted GO</td> </tr> <tr style="clear:both;"> <td class="col-xs-1">BP</td> <td class="col-xs-2"><a href="/go/view/5398" data-toggle="tooltip" data-placement="top" title=""The chemical reactions and pathways involving the phosphate group, the anion or salt of any phosphoric acid." [GOC:ai]">GO:0006796</a></td> <td class="col-xs-6">phosphate-containing compound metabolic process</td> <td class="col-xs-1">IEP</td> <td class="col-xs-2">Predicted GO</td> </tr> <tr style="clear:both;"> <td class="col-xs-1">BP</td> <td class="col-xs-2"><a href="/go/view/9999" data-toggle="tooltip" data-placement="top" title=""The chemical reactions and pathways involving coenzyme A, 3'-phosphoadenosine-(5')diphospho(4')pantatheine, an acyl carrier in many acylation and acyl-transfer reactions in which the intermediate is a thiol ester." [ISBN:0198547684]">GO:0015936</a></td> <td class="col-xs-6">coenzyme A metabolic process</td> <td class="col-xs-1">IEP</td> <td class="col-xs-2">Predicted GO</td> </tr> <tr style="clear:both;"> <td class="col-xs-1">MF</td> <td class="col-xs-2"><a href="/go/view/10313" data-toggle="tooltip" data-placement="top" title=""Catalysis of the transfer of a phosphate group, usually from ATP, to a substrate molecule." [ISBN:0198506732]">GO:0016301</a></td> <td class="col-xs-6">kinase activity</td> <td class="col-xs-1">IEP</td> <td class="col-xs-2">Predicted GO</td> </tr> <tr style="clear:both;"> <td class="col-xs-1">BP</td> <td class="col-xs-2"><a href="/go/view/10321" data-toggle="tooltip" data-placement="top" title=""The process of introducing a phosphate group into a molecule, usually with the formation of a phosphoric ester, a phosphoric anhydride or a phosphoric amide." [ISBN:0198506732]">GO:0016310</a></td> <td class="col-xs-6">phosphorylation</td> <td class="col-xs-1">IEP</td> <td class="col-xs-2">Predicted GO</td> </tr> <tr style="clear:both;"> <td class="col-xs-1">MF</td> <td class="col-xs-2"><a href="/go/view/10699" data-toggle="tooltip" data-placement="top" title=""Catalysis of the transfer of a phosphorus-containing group from one compound (donor) to another (acceptor)." [GOC:jl, ISBN:0198506732]">GO:0016772</a></td> <td class="col-xs-6">transferase activity, transferring phosphorus-containing groups</td> <td class="col-xs-1">IEP</td> <td class="col-xs-2">Predicted GO</td> </tr> <tr style="clear:both;"> <td class="col-xs-1">MF</td> <td class="col-xs-2"><a href="/go/view/10700" data-toggle="tooltip" data-placement="top" title=""Catalysis of the transfer of a phosphorus-containing group from one compound (donor) to an alcohol group (acceptor)." [GOC:jl]">GO:0016773</a></td> <td class="col-xs-6">phosphotransferase activity, alcohol group as acceptor</td> <td class="col-xs-1">IEP</td> <td class="col-xs-2">Predicted GO</td> </tr> <tr style="clear:both;"> <td class="col-xs-1">BP</td> <td class="col-xs-2"><a href="/go/view/17281" data-toggle="tooltip" data-placement="top" title=""The chemical reactions and pathways involving a nucleoside bisphosphate, a compound consisting of a nucleobase linked to a deoxyribose or ribose sugar esterified with one phosphate group attached to each of two different hydroxyl groups on the sugar." [GOC:mah, GOC:pde]">GO:0033865</a></td> <td class="col-xs-6">nucleoside bisphosphate metabolic process</td> <td class="col-xs-1">IEP</td> <td class="col-xs-2">Predicted GO</td> </tr> <tr style="clear:both;"> <td class="col-xs-1">BP</td> <td class="col-xs-2"><a href="/go/view/17291" data-toggle="tooltip" data-placement="top" title=""The chemical reactions and pathways involving a ribonucleoside bisphosphate, a compound consisting of a nucleobase linked to a ribose sugar esterified with one phosphate group attached to each of two different hydroxyl groups on the sugar." [GOC:mah, GOC:pde]">GO:0033875</a></td> <td class="col-xs-6">ribonucleoside bisphosphate metabolic process</td> <td class="col-xs-1">IEP</td> <td class="col-xs-2">Predicted GO</td> </tr> <tr style="clear:both;"> <td class="col-xs-1">BP</td> <td class="col-xs-2"><a href="/go/view/17448" data-toggle="tooltip" data-placement="top" title=""The chemical reactions and pathways involving a purine nucleoside bisphosphate, a compound consisting of a purine base linked to a deoxyribose or ribose sugar esterified with one phosphate group attached to each of two different hydroxyl groups on the sugar." [GOC:mah, GOC:pde]">GO:0034032</a></td> <td class="col-xs-6">purine nucleoside bisphosphate metabolic process</td> <td class="col-xs-1">IEP</td> <td class="col-xs-2">Predicted GO</td> </tr> <tr style="clear:both;"> <td class="col-xs-1">BP</td> <td class="col-xs-2"><a href="/go/view/21831" data-toggle="tooltip" data-placement="top" title=""The enzymatic addition of a sequence of adenylyl residues at the 3' end of an RNA molecule." [GOC:jl]">GO:0043631</a></td> <td class="col-xs-6">RNA polyadenylation</td> <td class="col-xs-1">IEP</td> <td class="col-xs-2">Predicted GO</td> </tr> <tr style="clear:both;"> <td class="col-xs-1">BP</td> <td class="col-xs-2"><a href="/go/view/22434" data-toggle="tooltip" data-placement="top" title=""The chemical reactions and pathways involving a specific protein, rather than of proteins in general, occurring at the level of an individual cell. Includes cellular protein modification." [GOC:jl]">GO:0044267</a></td> <td class="col-xs-6">cellular protein metabolic process</td> <td class="col-xs-1">IEP</td> <td class="col-xs-2">Predicted GO</td> </tr> <tr style="clear:both;"> <td class="col-xs-1">MF</td> <td class="col-xs-2"><a href="/go/view/32293" data-toggle="tooltip" data-placement="top" title=""Catalysis of the transfer of an adenylyl group to an acceptor." [GOC:mah]">GO:0070566</a></td> <td class="col-xs-6">adenylyltransferase activity</td> <td class="col-xs-1">IEP</td> <td class="col-xs-2">Predicted GO</td> </tr> </tbody> </table> </div> </div> <div class="tab-pane fade" id="tab3default"> <div class="table-responsive"> <table class="table table-striped table-fixed" id="interpro_table"> <thead> <tr> <th class="col-xs-3" data-sort="string-ins"><span class="sort-icon"></span><abbr title="Click to show help" href="/help/interpro_domain" data-target="#helpModal">InterPro domains</abbr></th> <th class="col-xs-5" data-sort="string-ins"><span class="sort-icon"></span>Description</th> <th class="col-xs-2" data-sort="int"><span class="sort-icon"></span>Start</th> <th class="col-xs-2" data-sort="int"><span class="sort-icon"></span>Stop</th> </tr> </thead> <tbody> <tr> <td class="col-xs-3"><a href="/interpro/view/2120">IPR002554</a></td> <td class="col-xs-5">PP2A_B56</td> <td class="col-xs-2">19</td> <td class="col-xs-2">427</td> </tr> </tbody> </table> </div> </div> </div> </div> </div> <div class="row"> <div class="col-lg-12 col-md-12 col-sm-12"> <div class="panel panel-default"> <div class="panel-heading" id="links">External Links</div> <div class="table-responsive"> <table class="table table-striped table-separated"> <tbody> <tr> <td><em>No external refs found!</em></td> </td> </tr> </tbody> </table> </div> </div> </div> </div> <div class="modal" id="profileModal" tabindex="-1" role="dialog" aria-labelledby="profileModalLabel"> <div class="modal-dialog" role="document" style="width:1000px;height:800px;"> <div class="modal-content"> </div> </div> </div> </div> </div> </div> <footer class="footer" id="footer"> <div class="container"> <div class="row"> <div class="col-xs-2"><strong class="text-muted"><a href="/features" class="text-muted">CoNekT</a></strong></div> <div class="col-xs-2"><a href="/about" class="text-muted">About</a></div> <div class="col-xs-2"><a href="/contact" class="text-muted">Contact</a></div> <div class="col-xs-2"><a href="/disclaimer" class="text-muted">Disclaimer</a></div> <div class="col-xs-2"><a href="/privacy" class="text-muted">Privacy policy</a></div> </div> </div> </footer> <div class="modal" id="helpModal" tabindex="-1" role="dialog" aria-labelledby="helpModalLabel"> <div class="modal-dialog" role="document" style="width:1000px;height:800px;"> <div class="modal-content"> </div> </div> </div> <div class="modal" id="loaderModal" tabindex="-1" role="dialog" aria-labelledby="loaderModalLabel"> <div class="modal-dialog" role="document" style="width:1000px;height:800px;"> <div class="modal-content"> <div class="modal-body"> <div id="leafy_loader"></div> <p class="text-center text-muted" id="leafy_loader_text">Loading ... please wait ... </p> <p class="text-center" id="leafy_loader_close_btn" style="display:none"><button type="button" class="btn btn-primary" data-dismiss="modal" style>Close</button></p> </div> </div> </div> </div> <script src="/static/js/jquery.min.js"></script> <script src="/static/js/bootstrap.min.js"></script> <script src="/static/js/stupidtable.min.js"></script> <script src="/static/js/TweenMax.min.js"></script> <script src="/static/js/jquery.qtip.min.js"></script> <script src="/static/js/planet_loader.js"></script> <script> function init_qtip() { $('.qtip_tooltip').each(function() { $(this).qtip({ content: { text: function(event, api) { $.ajax({ url: api.elements.target.attr('qtip_href') }) .then(function(content) { // Set the tooltip content upon successful retrieval api.set('content.text', content); 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Type GO Term Name Evidence Source
CC GO:0000159 protein phosphatase type 2A complex IEA InterProScan predictions
BP GO:0007165 signal transduction IEA InterProScan predictions