LOC_Os05g48870

Description : auxin response factor 15, putative, expressed

Gene families : OG_42_0000050 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000050_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Oryza release: LOC_Os05g48870
Cluster	HCCA clusters: cluster_0094

Target	Alias	Description	ECC score	Gene Family Method
A4A49_35810	No alias	auxin response factor 8	0.02	Orthogroups_2024-Update
At3g61830	No alias	Auxin response factor 18 [Source:UniProtKB/Swiss-Prot;Acc:Q9C5W9]	0.02	Orthogroups_2024-Update
Bradi5g27400	No alias	auxin response factor 17	0.02	Orthogroups_2024-Update
GRMZM2G153233	No alias	auxin response factor 16	0.02	Orthogroups_2024-Update
HORVU6Hr1G058890.2	No alias	ARF-type transcription factor	0.04	Orthogroups_2024-Update
Potri.016G090300	No alias	auxin response factor 16	0.02	Orthogroups_2024-Update
Pp1s339_47V6	No alias	auxin response factor 10	0.02	Orthogroups_2024-Update
Pp1s65_227V6	No alias	auxin response	0.02	Orthogroups_2024-Update
Pp1s86_1V6	No alias	auxin response	0.02	Orthogroups_2024-Update
Seita.8G135700.1	No alias	ARF-type transcription factor	0.03	Orthogroups_2024-Update
Solyc08g082630	No alias	Auxin Response Factor 9A	0.03	Orthogroups_2024-Update
Sopen07g021880	No alias	Auxin response factor	0.02	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	IEA	InterProScan predictions
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	IEA	InterProScan predictions
BP	GO:0006355	regulation of transcription, DNA-templated	IEA	InterProScan predictions
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009719	response to endogenous stimulus	None	Extended
BP	GO:0009725	response to hormone	IEA	InterProScan predictions
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010033	response to organic substance	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
BP	GO:0042221	response to chemical	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
CC	GO:0044424	intracellular part	None	Extended
CC	GO:0044464	cell part	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0050896	response to stimulus	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2000112	regulation of cellular macromolecule biosynthetic process	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

Toggle parental

Type	GO Term	Name	Evidence	Source
MF	GO:0004527	exonuclease activity	IEP	Predicted GO
MF	GO:0005509	calcium ion binding	IEP	Predicted GO
BP	GO:0006457	protein folding	IEP	Predicted GO
MF	GO:0008134	transcription factor binding	IEP	Predicted GO
MF	GO:0008408	3'-5' exonuclease activity	IEP	Predicted GO
BP	GO:0016458	gene silencing	IEP	Predicted GO
MF	GO:0017025	TBP-class protein binding	IEP	Predicted GO
BP	GO:0031047	gene silencing by RNA	IEP	Predicted GO
MF	GO:0031072	heat shock protein binding	IEP	Predicted GO
MF	GO:0051082	unfolded protein binding	IEP	Predicted GO

InterPro domains	Description	Start	Stop
IPR010525	Auxin_resp	268	348
IPR003340	B3_DNA-bd	142	243

External Links

No external refs found!

LOC_Os05g48870

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation