LOC_Os05g49320

Description : ribosomal protein L7/L12 C-terminal domain containing protein, expressed

Gene families : OG_42_0003941 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0003941_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Oryza release: LOC_Os05g49320
Cluster	HCCA clusters: cluster_0048

Target	Alias	Description	ECC score	Gene Family Method
A4A49_11444	No alias	50s ribosomal protein l12, chloroplastic	0.03	Orthogroups_2024-Update
Bradi2g45730	No alias	ribosomal protein L12-C	0.03	Orthogroups_2024-Update
Brara.B03314.1	No alias	component *(bL12c) of large plastid ribosomal-subunit proteome	0.03	Orthogroups_2024-Update
Brara.F03180.1	No alias	component *(bL12c) of large plastid ribosomal-subunit proteome	0.02	Orthogroups_2024-Update
Brara.F03181.1	No alias	component *(bL12c) of large plastid ribosomal-subunit proteome	0.03	Orthogroups_2024-Update
Cre13.g581650	No alias	ribosomal protein L12-A	0.04	Orthogroups_2024-Update
HORVU1Hr1G089760.1	No alias	component *(bL12c) of large plastid ribosomal-subunit proteome	0.03	Orthogroups_2024-Update
HORVU3Hr1G059810.2	No alias	component *(bL12c) of large plastid ribosomal-subunit proteome	0.02	Orthogroups_2024-Update
Kfl00181_0250	kfl00181_0250_v1.1	(q9tl30\|rk12_nepol : 115.0) Chloroplast 50S ribosomal...	0.04	Orthogroups_2024-Update
Mp5g15720.1	No alias	component psRPL12 of large ribosomal subunit proteome	0.05	Orthogroups_2024-Update
Potri.001G346100	No alias	ribosomal protein L12-A	0.05	Orthogroups_2024-Update
Pp1s215_82V6	No alias	ribosomal protein l12	0.04	Orthogroups_2024-Update
Pp1s242_95V6	No alias	ribosomal protein l12	0.04	Orthogroups_2024-Update
Pp1s60_169V6	No alias	ribosomal protein l12	0.02	Orthogroups_2024-Update
Pp1s6_183V6	No alias	ribosomal protein l12	0.04	Orthogroups_2024-Update
Seita.5G253700.1	No alias	component *(bL12c) of large plastid ribosomal-subunit proteome	0.03	Orthogroups_2024-Update
Sobic.003G246400.1	No alias	component *(bL12c) of large plastid ribosomal-subunit proteome	0.04	Orthogroups_2024-Update
Sopen02g031490	No alias	Ribosomal protein L7/L12 C-terminal domain	0.03	Orthogroups_2024-Update
Sopen02g031500	No alias	Ribosomal protein L7/L12 C-terminal domain	0.05	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003735	structural constituent of ribosome	IEA	InterProScan predictions
MF	GO:0005198	structural molecule activity	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005622	intracellular	IEA	InterProScan predictions
CC	GO:0005840	ribosome	IEA	InterProScan predictions
BP	GO:0006412	translation	IEA	InterProScan predictions
BP	GO:0006518	peptide metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
CC	GO:0032991	protein-containing complex	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034645	cellular macromolecule biosynthetic process	None	Extended
BP	GO:0043043	peptide biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
BP	GO:0043603	cellular amide metabolic process	None	Extended
BP	GO:0043604	amide biosynthetic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044267	cellular protein metabolic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
CC	GO:0044424	intracellular part	None	Extended
CC	GO:0044444	cytoplasmic part	None	Extended
CC	GO:0044464	cell part	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901566	organonitrogen compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended
CC	GO:1990904	ribonucleoprotein complex	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0004470	malic enzyme activity	IEP	Predicted GO
MF	GO:0004471	malate dehydrogenase (decarboxylating) (NAD+) activity	IEP	Predicted GO
MF	GO:0004568	chitinase activity	IEP	Predicted GO
MF	GO:0004853	uroporphyrinogen decarboxylase activity	IEP	Predicted GO
BP	GO:0006022	aminoglycan metabolic process	IEP	Predicted GO
BP	GO:0006026	aminoglycan catabolic process	IEP	Predicted GO
BP	GO:0006030	chitin metabolic process	IEP	Predicted GO
BP	GO:0006032	chitin catabolic process	IEP	Predicted GO
BP	GO:0006040	amino sugar metabolic process	IEP	Predicted GO
BP	GO:0006778	porphyrin-containing compound metabolic process	IEP	Predicted GO
BP	GO:0006779	porphyrin-containing compound biosynthetic process	IEP	Predicted GO
BP	GO:0006811	ion transport	IEP	Predicted GO
BP	GO:0006812	cation transport	IEP	Predicted GO
CC	GO:0016459	myosin complex	IEP	Predicted GO
MF	GO:0016615	malate dehydrogenase activity	IEP	Predicted GO
MF	GO:0016830	carbon-carbon lyase activity	IEP	Predicted GO
MF	GO:0016831	carboxy-lyase activity	IEP	Predicted GO
BP	GO:0016998	cell wall macromolecule catabolic process	IEP	Predicted GO
MF	GO:0019843	rRNA binding	IEP	Predicted GO
BP	GO:0030001	metal ion transport	IEP	Predicted GO
BP	GO:0033013	tetrapyrrole metabolic process	IEP	Predicted GO
BP	GO:0033014	tetrapyrrole biosynthetic process	IEP	Predicted GO
BP	GO:0042737	drug catabolic process	IEP	Predicted GO
BP	GO:0044036	cell wall macromolecule metabolic process	IEP	Predicted GO
BP	GO:0046348	amino sugar catabolic process	IEP	Predicted GO
MF	GO:0050662	coenzyme binding	IEP	Predicted GO
BP	GO:0051186	cofactor metabolic process	IEP	Predicted GO
BP	GO:0051188	cofactor biosynthetic process	IEP	Predicted GO
BP	GO:1901071	glucosamine-containing compound metabolic process	IEP	Predicted GO
BP	GO:1901072	glucosamine-containing compound catabolic process	IEP	Predicted GO

InterPro domains	Description	Start	Stop
IPR008932	Ribosomal_L7/L12_oligo	54	100
IPR013823	Ribosomal_L7/L12_C	112	178

External Links

No external refs found!

LOC_Os05g49320

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation