1. Home
  2. Species
  3. Oryza sativa
  4. Sequence
  5. LOC_Os05g50900

LOC_Os05g50900


Description : helix-loop-helix DNA-binding protein, putative, expressed


Gene families : OG_42_0000286 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000286_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Oryza release: LOC_Os05g50900
Cluster HCCA clusters: cluster_0118

Target Alias Description ECC score Gene Family Method Actions
Brara.E03296.1 No alias bHLH-type transcription factor 0.02 Orthogroups_2024-Update
Glyma.02G129100 No alias basic helix-loop-helix (bHLH) DNA-binding superfamily protein 0.02 Orthogroups_2024-Update
Glyma.14G178000 No alias basic helix-loop-helix (bHLH) DNA-binding superfamily protein 0.02 Orthogroups_2024-Update
Sopen05g032160 No alias Helix-loop-helix DNA-binding domain 0.04 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0046983 protein dimerization activity IEA InterProScan predictions
Toggle parental
Type GO Term Name Evidence Source
MF GO:0004888 transmembrane signaling receptor activity IEP Predicted GO
MF GO:0004970 ionotropic glutamate receptor activity IEP Predicted GO
MF GO:0005230 extracellular ligand-gated ion channel activity IEP Predicted GO
CC GO:0005618 cell wall IEP Predicted GO
MF GO:0008066 glutamate receptor activity IEP Predicted GO
MF GO:0015276 ligand-gated ion channel activity IEP Predicted GO
MF GO:0016762 xyloglucan:xyloglucosyl transferase activity IEP Predicted GO
MF GO:0022824 transmitter-gated ion channel activity IEP Predicted GO
MF GO:0022834 ligand-gated channel activity IEP Predicted GO
MF GO:0022835 transmitter-gated channel activity IEP Predicted GO
MF GO:0022836 gated channel activity IEP Predicted GO
MF GO:0022839 ion gated channel activity IEP Predicted GO
CC GO:0030312 external encapsulating structure IEP Predicted GO
MF GO:0030594 neurotransmitter receptor activity IEP Predicted GO
MF GO:0031625 ubiquitin protein ligase binding IEP Predicted GO
MF GO:0038023 signaling receptor activity IEP Predicted GO
MF GO:0044389 ubiquitin-like protein ligase binding IEP Predicted GO
CC GO:0048046 apoplast IEP Predicted GO
BP GO:0050789 regulation of biological process IEP Predicted GO
BP GO:0050794 regulation of cellular process IEP Predicted GO
MF GO:0060089 molecular transducer activity IEP Predicted GO
InterPro domains Description Start Stop
IPR011598 bHLH_dom 256 307
No external refs found!