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Description : pentatricopeptide repeat protein PPR986-12, putative, expressed
Gene families : OG_42_0000001 (Orthogroups_2024-Update) Phylogenetic Tree(s): No tree available for this family
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | Oryza release: LOC_Os05g50950 | |
| Cluster | HCCA clusters: cluster_0086 |
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| Glyma.12G001100 | No alias | Pentatricopeptide repeat (PPR) superfamily protein | 0.03 | Orthogroups_2024-Update | |
| PSME_00030185-RA | No alias | (at3g57430 : 680.0) Encodes a chloroplast RNA editing... | 0.03 | Orthogroups_2024-Update | |
| Sopen03g038010 | No alias | PPR repeat | 0.02 | Orthogroups_2024-Update | |
| Sopen05g007940 | No alias | PPR repeat family | 0.02 | Orthogroups_2024-Update |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0008270 | zinc ion binding | IEA | InterProScan predictions |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0004807 | triose-phosphate isomerase activity | IEP | Predicted GO |
| MF | GO:0004817 | cysteine-tRNA ligase activity | IEP | Predicted GO |
| BP | GO:0006423 | cysteinyl-tRNA aminoacylation | IEP | Predicted GO |
| BP | GO:0015977 | carbon fixation | IEP | Predicted GO |
| MF | GO:0016860 | intramolecular oxidoreductase activity | IEP | Predicted GO |
| MF | GO:0016861 | intramolecular oxidoreductase activity, interconverting aldoses and ketoses | IEP | Predicted GO |
| MF | GO:0016984 | ribulose-bisphosphate carboxylase activity | IEP | Predicted GO |
| InterPro domains | Description | Start | Stop |
|---|---|---|---|
| IPR002885 | Pentatricopeptide_repeat | 357 | 403 |
| IPR002885 | Pentatricopeptide_repeat | 426 | 474 |
| IPR002885 | Pentatricopeptide_repeat | 255 | 303 |
| IPR002885 | Pentatricopeptide_repeat | 527 | 574 |
| IPR002885 | Pentatricopeptide_repeat | 603 | 624 |
| IPR002885 | Pentatricopeptide_repeat | 224 | 252 |
| IPR002885 | Pentatricopeptide_repeat | 331 | 356 |
| IPR002885 | Pentatricopeptide_repeat | 131 | 152 |
| IPR032867 | DYW_dom | 701 | 825 |
| No external refs found! |