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  5. LOC_Os05g50960

LOC_Os05g50960


Description : polygalacturonase, putative, expressed


Gene families : OG_42_0000259 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000259_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Oryza release: LOC_Os05g50960
Cluster HCCA clusters: cluster_0126

Target Alias Description ECC score Gene Family Method Actions
At2g23900 No alias Glycoside hydrolase family 28 protein/polygalacturonase... 0.03 Orthogroups_2024-Update
At3g48950 No alias Endo-polygalacturonase-like protein... 0.02 Orthogroups_2024-Update
Bradi3g09597 No alias Pectin lyase-like superfamily protein 0.02 Orthogroups_2024-Update
GRMZM2G348602 No alias Pectin lyase-like superfamily protein 0.02 Orthogroups_2024-Update
Glyma.19G213400 No alias Pectin lyase-like superfamily protein 0.04 Orthogroups_2024-Update
HORVU5Hr1G117470.3 No alias EC_3.2 glycosylase 0.03 Orthogroups_2024-Update
LOC_Os01g43160 No alias polygalacturonase, putative, expressed 0.03 Orthogroups_2024-Update
PSME_00027467-RA No alias (at3g61490 : 556.0) Pectin lyase-like superfamily... 0.03 Orthogroups_2024-Update
Potri.003G139100 No alias Pectin lyase-like superfamily protein 0.02 Orthogroups_2024-Update
Potri.008G211500 No alias Pectin lyase-like superfamily protein 0.03 Orthogroups_2024-Update
Potri.010G008600 No alias Pectin lyase-like superfamily protein 0.02 Orthogroups_2024-Update
Seita.2G217700.1 No alias EC_3.2 glycosylase 0.03 Orthogroups_2024-Update
Seita.9G022500.1 No alias EC_3.2 glycosylase 0.02 Orthogroups_2024-Update
Sobic.003G223100.1 No alias EC_3.2 glycosylase 0.03 Orthogroups_2024-Update
Solyc03g007950 No alias Pectin lyase-like superfamily protein (AHRD V3.3 *** AT4G23500.1) 0.02 Orthogroups_2024-Update
Sopen08g029810 No alias Glycosyl hydrolases family 28 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0004650 polygalacturonase activity IEA InterProScan predictions
BP GO:0005975 carbohydrate metabolic process IEA InterProScan predictions
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Type GO Term Name Evidence Source
MF GO:0004555 alpha,alpha-trehalase activity IEP Predicted GO
MF GO:0004672 protein kinase activity IEP Predicted GO
MF GO:0005092 GDP-dissociation inhibitor activity IEP Predicted GO
MF GO:0005094 Rho GDP-dissociation inhibitor activity IEP Predicted GO
BP GO:0005984 disaccharide metabolic process IEP Predicted GO
BP GO:0005985 sucrose metabolic process IEP Predicted GO
BP GO:0006464 cellular protein modification process IEP Predicted GO
BP GO:0006468 protein phosphorylation IEP Predicted GO
BP GO:0006793 phosphorus metabolic process IEP Predicted GO
BP GO:0006796 phosphate-containing compound metabolic process IEP Predicted GO
BP GO:0007165 signal transduction IEP Predicted GO
BP GO:0007186 G protein-coupled receptor signaling pathway IEP Predicted GO
MF GO:0008236 serine-type peptidase activity IEP Predicted GO
BP GO:0009311 oligosaccharide metabolic process IEP Predicted GO
MF GO:0015927 trehalase activity IEP Predicted GO
MF GO:0016157 sucrose synthase activity IEP Predicted GO
MF GO:0016301 kinase activity IEP Predicted GO
BP GO:0016310 phosphorylation IEP Predicted GO
MF GO:0016740 transferase activity IEP Predicted GO
MF GO:0016772 transferase activity, transferring phosphorus-containing groups IEP Predicted GO
MF GO:0016773 phosphotransferase activity, alcohol group as acceptor IEP Predicted GO
MF GO:0017171 serine hydrolase activity IEP Predicted GO
MF GO:0019001 guanyl nucleotide binding IEP Predicted GO
BP GO:0019538 protein metabolic process IEP Predicted GO
MF GO:0030695 GTPase regulator activity IEP Predicted GO
MF GO:0031683 G-protein beta/gamma-subunit complex binding IEP Predicted GO
BP GO:0036211 protein modification process IEP Predicted GO
BP GO:0043412 macromolecule modification IEP Predicted GO
BP GO:0044262 cellular carbohydrate metabolic process IEP Predicted GO
BP GO:0044267 cellular protein metabolic process IEP Predicted GO
MF GO:0044877 protein-containing complex binding IEP Predicted GO
MF GO:0140096 catalytic activity, acting on a protein IEP Predicted GO
BP GO:1901564 organonitrogen compound metabolic process IEP Predicted GO
InterPro domains Description Start Stop
IPR000743 Glyco_hydro_28 145 423
No external refs found!