LOC_Os06g01890

Description : MADS-box transcription factor, putative, expressed

Gene families : OG_42_0000009 (Orthogroups_2024-Update) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Oryza release: LOC_Os06g01890
Cluster	HCCA clusters: cluster_0091

Target	Alias	Description	ECC score	Gene Family Method
A4A49_19521	No alias	developmental protein sepallata 1	0.02	Orthogroups_2024-Update
At1g01530	No alias	AGL28 [Source:UniProtKB/TrEMBL;Acc:A0A178WE04]	0.02	Orthogroups_2024-Update
At3g02310	No alias	SEP2 [Source:UniProtKB/TrEMBL;Acc:A0A178V680]	0.02	Orthogroups_2024-Update
At5g23260	No alias	K-box region and MADS-box transcription factor family...	0.02	Orthogroups_2024-Update
Bradi1g69890	No alias	K-box region and MADS-box transcription factor family protein	0.02	Orthogroups_2024-Update
Brara.G01735.1	No alias	MADS/AGL-type transcription factor	0.03	Orthogroups_2024-Update
GRMZM2G044408	No alias	AGAMOUS-like 44	0.02	Orthogroups_2024-Update
GRMZM2G152415	No alias	AGAMOUS-like 66	0.02	Orthogroups_2024-Update
Glyma.08G105500	No alias	K-box region and MADS-box transcription factor family protein	0.03	Orthogroups_2024-Update
Glyma.17G081200	No alias	AGAMOUS-like 8	0.02	Orthogroups_2024-Update
HORVU3Hr1G095200.15	No alias	MADS/AGL-type transcription factor	0.02	Orthogroups_2024-Update
LOC_Os07g41370	No alias	OsMADS18 - MADS-box family gene with MIKCc type-box, expressed	0.02	Orthogroups_2024-Update
LOC_Os12g10540	No alias	OsMADS13 - MADS-box family gene with MIKCc type-box, expressed	0.03	Orthogroups_2024-Update
Potri.004G010200	No alias	AGAMOUS-like 62	0.03	Orthogroups_2024-Update
Seita.1G209300.1	No alias	MADS/AGL-type transcription factor	0.02	Orthogroups_2024-Update
Seita.3G098400.1	No alias	MADS/AGL-type transcription factor	0.02	Orthogroups_2024-Update
Sobic.006G107700.2	No alias	MADS/AGL-type transcription factor	0.02	Orthogroups_2024-Update
Solyc01g103550	No alias	LOW QUALITY:Transcription factor, MADS-box (AHRD V3.3...	0.02	Orthogroups_2024-Update
Sopen08g028450	No alias	SRF-type transcription factor (DNA-binding and...	0.02	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	IEA	InterProScan predictions
MF	GO:0003700	DNA-binding transcription factor activity	IEA	InterProScan predictions
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	IEA	InterProScan predictions
BP	GO:0006355	regulation of transcription, DNA-templated	IEA	InterProScan predictions
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
CC	GO:0044424	intracellular part	None	Extended
CC	GO:0044464	cell part	None	Extended
MF	GO:0046983	protein dimerization activity	IEA	InterProScan predictions
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0140110	transcription regulator activity	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2000112	regulation of cellular macromolecule biosynthetic process	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0019239	deaminase activity	IEP	Predicted GO
MF	GO:0043565	sequence-specific DNA binding	IEP	Predicted GO

InterPro domains	Description	Start	Stop
IPR002487	TF_Kbox	94	177
IPR002100	TF_MADSbox	19	66

External Links

No external refs found!

LOC_Os06g01890

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation