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  5. LOC_Os06g01960

LOC_Os06g01960


Description : retrotransposon protein, putative, unclassified, expressed


Gene families : OG_42_0000438 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000438_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Oryza release: LOC_Os06g01960
Cluster HCCA clusters: cluster_0102

Target Alias Description ECC score Gene Family Method Actions
Bradi1g47396 No alias Function unknown 0.03 Orthogroups_2024-Update
Bradi3g29643 No alias Function unknown 0.04 Orthogroups_2024-Update
Bradi4g05386 No alias Function unknown 0.03 Orthogroups_2024-Update
HORVU0Hr1G025290.1 No alias Unknown function 0.03 Orthogroups_2024-Update
HORVU2Hr1G057230.2 No alias Unknown function 0.03 Orthogroups_2024-Update
HORVU2Hr1G059590.1 No alias Unknown function 0.03 Orthogroups_2024-Update
HORVU4Hr1G039210.1 No alias Unknown function 0.02 Orthogroups_2024-Update
HORVU5Hr1G029780.2 No alias Unknown function 0.03 Orthogroups_2024-Update
HORVU5Hr1G068670.1 No alias Unknown function 0.04 Orthogroups_2024-Update
HORVU6Hr1G018550.1 No alias Unknown function 0.03 Orthogroups_2024-Update
HORVU7Hr1G064000.1 No alias Unknown function 0.03 Orthogroups_2024-Update
LOC_Os06g14270 No alias retrotransposon protein, putative, unclassified 0.03 Orthogroups_2024-Update
LOC_Os09g26860 No alias retrotransposon protein, putative, unclassified 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
CC GO:0000786 nucleosome IEP Predicted GO
MF GO:0003857 3-hydroxyacyl-CoA dehydrogenase activity IEP Predicted GO
MF GO:0004590 orotidine-5'-phosphate decarboxylase activity IEP Predicted GO
MF GO:0004832 valine-tRNA ligase activity IEP Predicted GO
BP GO:0006206 pyrimidine nucleobase metabolic process IEP Predicted GO
BP GO:0006207 'de novo' pyrimidine nucleobase biosynthetic process IEP Predicted GO
BP GO:0006438 valyl-tRNA aminoacylation IEP Predicted GO
BP GO:0009112 nucleobase metabolic process IEP Predicted GO
MF GO:0016846 carbon-sulfur lyase activity IEP Predicted GO
BP GO:0019856 pyrimidine nucleobase biosynthetic process IEP Predicted GO
CC GO:0032993 protein-DNA complex IEP Predicted GO
CC GO:0044422 organelle part IEP Predicted GO
CC GO:0044427 chromosomal part IEP Predicted GO
CC GO:0044446 intracellular organelle part IEP Predicted GO
CC GO:0044815 DNA packaging complex IEP Predicted GO
BP GO:0046112 nucleobase biosynthetic process IEP Predicted GO
BP GO:0072527 pyrimidine-containing compound metabolic process IEP Predicted GO
BP GO:0072528 pyrimidine-containing compound biosynthetic process IEP Predicted GO

No InterPro domains available for this sequence

No external refs found!