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  5. LOC_Os06g04290

LOC_Os06g04290


Description : S10/S20 domain containing ribosomal protein, putative, expressed


Gene families : OG_42_0001666 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001666_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Oryza release: LOC_Os06g04290
Cluster HCCA clusters: cluster_0063

Target Alias Description ECC score Gene Family Method Actions
115495 No alias Ribosomal protein S10p/S20e family protein 0.02 Orthogroups_2024-Update
At3g47370 No alias 40S ribosomal protein S20-2... 0.02 Orthogroups_2024-Update
Bradi1g51650 No alias Ribosomal protein S10p/S20e family protein 0.03 Orthogroups_2024-Update
Brara.I00689.1 No alias component *(uS10) of small ribosomal-subunit (SSU) proteome 0.04 Orthogroups_2024-Update
Brara.J00726.1 No alias component *(uS10) of small ribosomal-subunit (SSU) proteome 0.02 Orthogroups_2024-Update
Cre16.g660150 No alias Ribosomal protein S10p/S20e family protein 0.03 Orthogroups_2024-Update
Glyma.19G145000 No alias Ribosomal protein S10p/S20e family protein 0.02 Orthogroups_2024-Update
HORVU7Hr1G028050.5 No alias component *(uS10) of small ribosomal-subunit (SSU) proteome 0.03 Orthogroups_2024-Update
Mp2g09440.1 No alias component RPS20 of SSU proteome 0.03 Orthogroups_2024-Update
Potri.012G128300 No alias Ribosomal protein S10p/S20e family protein 0.03 Orthogroups_2024-Update
Potri.015G129800 No alias Ribosomal protein S10p/S20e family protein 0.02 Orthogroups_2024-Update
Pp1s257_105V6 No alias 40s ribosomal protein 0.02 Orthogroups_2024-Update
Pp1s271_9V6 No alias 40s ribosomal protein 0.02 Orthogroups_2024-Update
Seita.9G468800.1 No alias component *(uS10) of small ribosomal-subunit (SSU) proteome 0.03 Orthogroups_2024-Update
Sobic.001G436200.1 No alias component *(uS10) of small ribosomal-subunit (SSU) proteome 0.04 Orthogroups_2024-Update
Sobic.010G023900.1 No alias component *(uS10) of small ribosomal-subunit (SSU) proteome 0.04 Orthogroups_2024-Update
Solyc01g096580 No alias ribosomal protein S10p/S20e family protein 0.03 Orthogroups_2024-Update
Solyc01g096590 No alias ribosomal protein S10p/S20e family protein 0.03 Orthogroups_2024-Update
Sopen00g005650 No alias Ribosomal protein S10p/S20e 0.02 Orthogroups_2024-Update
Sopen01g040310 No alias Ribosomal protein S10p/S20e 0.02 Orthogroups_2024-Update
Sopen01g040320 No alias Ribosomal protein S10p/S20e 0.03 Orthogroups_2024-Update
evm.model.contig_560.7 No alias (at3g47370 : 151.0) Ribosomal protein S10p/S20e family... 0.04 Orthogroups_2024-Update
evm.model.tig00000842.28 No alias (p35686|rs20_orysa : 147.0) 40S ribosomal protein S20 -... 0.05 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEP Predicted GO
MF GO:0003743 translation initiation factor activity IEP Predicted GO
MF GO:0004177 aminopeptidase activity IEP Predicted GO
MF GO:0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity IEP Predicted GO
MF GO:0005198 structural molecule activity IEP Predicted GO
MF GO:0005319 lipid transporter activity IEP Predicted GO
CC GO:0005575 cellular_component IEP Predicted GO
CC GO:0005622 intracellular IEP Predicted GO
CC GO:0005737 cytoplasm IEP Predicted GO
CC GO:0005840 ribosome IEP Predicted GO
CC GO:0005852 eukaryotic translation initiation factor 3 complex IEP Predicted GO
BP GO:0006364 rRNA processing IEP Predicted GO
BP GO:0006412 translation IEP Predicted GO
BP GO:0006413 translational initiation IEP Predicted GO
BP GO:0006518 peptide metabolic process IEP Predicted GO
BP GO:0006869 lipid transport IEP Predicted GO
BP GO:0006897 endocytosis IEP Predicted GO
MF GO:0008135 translation factor activity, RNA binding IEP Predicted GO
BP GO:0009058 biosynthetic process IEP Predicted GO
BP GO:0009059 macromolecule biosynthetic process IEP Predicted GO
BP GO:0010215 cellulose microfibril organization IEP Predicted GO
BP GO:0016049 cell growth IEP Predicted GO
BP GO:0016072 rRNA metabolic process IEP Predicted GO
MF GO:0016645 oxidoreductase activity, acting on the CH-NH group of donors IEP Predicted GO
MF GO:0016646 oxidoreductase activity, acting on the CH-NH group of donors, NAD or NADP as acceptor IEP Predicted GO
BP GO:0019538 protein metabolic process IEP Predicted GO
MF GO:0030145 manganese ion binding IEP Predicted GO
BP GO:0030198 extracellular matrix organization IEP Predicted GO
CC GO:0031225 anchored component of membrane IEP Predicted GO
MF GO:0031369 translation initiation factor binding IEP Predicted GO
CC GO:0032991 protein-containing complex IEP Predicted GO
MF GO:0033926 glycopeptide alpha-N-acetylgalactosaminidase activity IEP Predicted GO
BP GO:0034645 cellular macromolecule biosynthetic process IEP Predicted GO
BP GO:0040007 growth IEP Predicted GO
BP GO:0043043 peptide biosynthetic process IEP Predicted GO
BP GO:0043062 extracellular structure organization IEP Predicted GO
CC GO:0043226 organelle IEP Predicted GO
CC GO:0043228 non-membrane-bounded organelle IEP Predicted GO
CC GO:0043229 intracellular organelle IEP Predicted GO
CC GO:0043232 intracellular non-membrane-bounded organelle IEP Predicted GO
BP GO:0043603 cellular amide metabolic process IEP Predicted GO
BP GO:0043604 amide biosynthetic process IEP Predicted GO
BP GO:0044249 cellular biosynthetic process IEP Predicted GO
BP GO:0044267 cellular protein metabolic process IEP Predicted GO
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP Predicted GO
CC GO:0044424 intracellular part IEP Predicted GO
CC GO:0044444 cytoplasmic part IEP Predicted GO
CC GO:0044464 cell part IEP Predicted GO
BP GO:0061024 membrane organization IEP Predicted GO
BP GO:0098657 import into cell IEP Predicted GO
BP GO:0120009 intermembrane lipid transfer IEP Predicted GO
MF GO:0120013 intermembrane lipid transfer activity IEP Predicted GO
MF GO:0140103 catalytic activity, acting on a glycoprotein IEP Predicted GO
BP GO:1901564 organonitrogen compound metabolic process IEP Predicted GO
BP GO:1901566 organonitrogen compound biosynthetic process IEP Predicted GO
BP GO:1901576 organic substance biosynthetic process IEP Predicted GO
CC GO:1990904 ribonucleoprotein complex IEP Predicted GO
InterPro domains Description Start Stop
IPR027486 Ribosomal_S10_dom 30 124
No external refs found!